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26 Open 103 Closed
26 Open 103 Closed
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Issues list

ICF stores created with numpy 1.x won't work with numpy 2.x bug Something isn't working
#258 opened Jun 19, 2024 by jeromekelleher
1
Run tests against numpy 2
#256 opened Jun 19, 2024 by jeromekelleher
3
Run tests against Zarr 3
#254 opened Jun 17, 2024 by tomwhite
1
ValueError: could not broadcast input array bug Something isn't working
#251 opened Jun 11, 2024 by tomwhite
Hypothesis testing for vcf2zarr
#249 opened Jun 10, 2024 by tomwhite
5
Restructure vcf2zarr docs
#239 opened Jun 9, 2024 by jeromekelleher
Refactor docs build infrastructure
#238 opened Jun 9, 2024 by jeromekelleher
Document copying to cloud storage documentation Improvements or additions to documentation help wanted Extra attention is needed
#234 opened Jun 4, 2024 by jeromekelleher
1
New tool: tskit2zarr
#232 opened Jun 3, 2024 by jeromekelleher
1
Fixup msprime based tests when packages are fixed
#223 opened May 25, 2024 by jeromekelleher
Inconsistent input/output argument order
#219 opened May 23, 2024 by hyanwong
6
vcf2zarr leaks semaphore objects
#209 opened May 15, 2024 by tomwhite
16
Replace python -m bio2zarr vcf2zarr with python -m bio2zarr.vcf2zarr?
#203 opened May 14, 2024 by jeromekelleher
2
Improve encoding memory bound estimate enhancement New feature or request
#186 opened May 7, 2024 by jeromekelleher
SVCR Local alleles
#185 opened May 7, 2024 by jeromekelleher
Windows support help wanted Extra attention is needed
#174 opened May 2, 2024 by jeromekelleher
Document dexplode/dencode usage on different schedulers
#147 opened Apr 26, 2024 by jeromekelleher
2
Track missingness count for each field in ICF
#131 opened Apr 19, 2024 by jeromekelleher
Add description to zarr arrays for fixed fields
#124 opened Apr 18, 2024 by jeromekelleher
More informative errors on IntermediateColumnarFormat missing files enhancement New feature or request
#95 opened Mar 27, 2024 by jeromekelleher
Test with indels overlapping VCF region boundaries
#68 opened Mar 6, 2024 by jeromekelleher
Test on VCF/BCF indexes not produced by htslib
#60 opened Mar 3, 2024 by jeromekelleher
Notebook progress support
#34 opened Feb 23, 2024 by jeromekelleher
4
Provide mechanism to change types of fields enhancement New feature or request help wanted Extra attention is needed
#33 opened Feb 23, 2024 by jeromekelleher
Add non-genotype data to plink conversion
#20 opened Feb 20, 2024 by jeromekelleher
1
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