This is a git repository for the code of our multi-platform data integration work for the identification of biomarkers with relation to Circulating Tumor Cells (CTCs)
The R code can be found in the R directory. The Makefile can be used to
produce various documentation of the analysis that exists in the .pdf files.
You need GNU make for that:
make
and also pandoc for creating the final pdf files (through Markdown).
The code exists in the R folder and in the "source" .Rmd files. We are
using the excellent knitr package for
transformation of the Rmd files to pdf. Therefore as the result of the make
command a number of PDF files are produced -- one for each Rmd file.