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@sheynkman-lab

Lab for Proteoform Systems Biology

At the Sheynkman Lab, we study disease-relevant protein forms, or “proteoforms”, by integrating cutting-edge analytical and computational approaches from genomi

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  1. Long-Read-Proteogenomics Long-Read-Proteogenomics Public template

    A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

    Python 38 16

  2. Long-Read-Proteogenomics-Analysis Long-Read-Proteogenomics-Analysis Public

    Jupyter Notebook 3 1

  3. splice-event-to-isoform-pipeline splice-event-to-isoform-pipeline Public

    Shay's splice event to isoform integration pipeline

    Python 3 1

  4. SQANTI3_protein SQANTI3_protein Public

    Forked from ConesaLab/SQANTI3

    Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes

    Python 1

  5. LIME LIME Public

    Python 1 1

  6. Alternative-Proteome-Detection-Project Alternative-Proteome-Detection-Project Public

    Python 1

Repositories

Showing 10 of 22 repositories
  • Mohi_MDS_LRP Public

    This repository is for LRP analysis for the Mohi Lab project focused on discovering proteoforms related to MDS.

    sheynkman-lab/Mohi_MDS_LRP’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 28, 2024
  • chloe_project Public
    sheynkman-lab/chloe_project’s past year of commit activity
    0 MIT 0 0 0 Updated Aug 6, 2024
  • zhang_mouse_aging Public
    sheynkman-lab/zhang_mouse_aging’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 31, 2024
  • Alternative-Proteome-Detection-Project Public
    sheynkman-lab/Alternative-Proteome-Detection-Project’s past year of commit activity
    Python 1 0 0 0 Updated May 25, 2024
  • biosurfer_analysis Public

    This repository reproduces the analysis for biosurfer tool

    sheynkman-lab/biosurfer_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 18, 2024
  • biosurfer Public

    "Surf" the biological network, from genome to transcriptome to proteome and back to gain insights into human disease biology.

    sheynkman-lab/biosurfer’s past year of commit activity
    Python 0 MIT 0 25 0 Updated Mar 15, 2024
  • sheynkman-lab-docs Public
    sheynkman-lab/sheynkman-lab-docs’s past year of commit activity
    0 0 0 0 Updated Aug 31, 2023
  • pdb-isoform-analysis Public

    Comparison of all available PDB chains (human) to the alternative isoforms in GENCODE.

    sheynkman-lab/pdb-isoform-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 12, 2023
  • revio-mas-bulk-benchmark Public
    sheynkman-lab/revio-mas-bulk-benchmark’s past year of commit activity
    Python 0 0 0 0 Updated Jun 6, 2023
  • sqtl_pipeline_v2 Public Forked from MayankMurali/sqtl_pipeline

    Pipeline to map sQTLs to protein isoforms

    sheynkman-lab/sqtl_pipeline_v2’s past year of commit activity
    Python 0 2 0 0 Updated May 17, 2023
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