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Correlation metrics #1

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3 of 5 tasks
KatharinaSchmid opened this issue Sep 23, 2020 · 0 comments
Closed
3 of 5 tasks

Correlation metrics #1

KatharinaSchmid opened this issue Sep 23, 2020 · 0 comments

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@KatharinaSchmid
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KatharinaSchmid commented Sep 23, 2020 •
edited by dylandv
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Different correlation metrics for single cell data shall be applied and evaluated. The current open points are:

  • Calculate correlation with gene network data - blood (Shuang)
  • Save correlation matrix from rho object separately to save memory (Dylan)
  • Implement spearman correlation on single cell data & compare it with rho (Dylan)
  • Compare correlation with String data base and add plots to presentation (Katharina)
  • Transfer Blueprint data to gearshift (Katharina)
mkorshe pushed a commit that referenced this issue Oct 12, 2022
# This script provides annotation of the function of genes, tested in…
9835969 
… different datasets (review, #1 comment)
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