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A utility to retrieve biological sequences from public and local databases.

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shujishigenobu/getseq

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Usage: getseq [options] -d, --database DB -L, --location LOCATION -r, --reverse -m, --format FORMAT

DB

  • ncbi:n -- NCBI nucleotide
  • ncbi:p -- NCBI protein

format

  • fasta (default)
  • genbank (gb)
  • gilist

Notes

  • -r and -L options are valid only for fasta mode.

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A utility to retrieve biological sequences from public and local databases.

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