haploCOBB

Workflow for generating haplotypes from DNA Metabarcoding data and generation of population genetic datasets. See paper: https://onlinelibrary.wiley.com/doi/10.1111/mec.15851

haploCOBB_pipeline.txt

Workflow that implements OBITools for initial read processing and quality control. JAMP (https://github.com/VascoElbrecht/JAMP) is used to generate haplotype level data. Data is reformatted to mimic traditional population genetic datasets for demographic analysis.

ngsfilter

Information containing sample names, barcodes and primers for demultiplexing with OBITools.

See 'Testing small-scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding'