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pull from development repo #619

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pull from development repo

pull from development repo #619

Workflow file for this run

.github/workflows/build.yml at 56dc379
name: Build
on: [push, pull_request]
jobs:
test-linux:
name: "Run tests on Linux"
runs-on: ubuntu-latest
strategy:
matrix:
python: ["3.11", "3.10", "3.9", "3.8"]
steps:
- uses: actions/checkout@v1
- uses: actions/setup-python@v1
with:
python-version: ${{ matrix.python }}
- name: Run Tests (Linux)
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install pytest-cov numpy "Cython<3.0.4"
python setup.py build_ext -i
python -m pip install .
pytest --cov-report html --cov-report xml --cov-report annotate --cov=pixell pixell/tests/ -s
- uses: codecov/codecov-action@v2
with:
token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos
verbose: true # optional (default = false)
test-macos:
name: "Run tests on MacOS"
runs-on: macos-latest
env:
# LDFLAGS: "-ld64" # For MacOS 13 and above (XCode CLT 15 and above.)
CC: gcc-12
CXX: gcc-12
FC: gfortran-12
DUCC0_NUM_THREADS: 2
steps:
- uses: actions/checkout@v1
- uses: actions/setup-python@v1
with:
python-version: "3.9"
- name: Install Dependencies (MacOS)
run: |
python -m pip install --upgrade pip setuptools wheel
python -m pip install numpy "Cython<3.0.4"
- name: Install Package (MacOS)
# The built-in fortran compiler does not link to gfortran (just numbered versions)
# and build_ext does not play nicely with that. So we link gfortran-X to gfortran.
run: |
ln -s $FC $(dirname $(which $FC))/gfortran
echo "Using FC=$FC CXX=$CXX CC=$CC"
python setup.py build_ext -i
python -m pip install .
- name: Run Tests (MacOS)
run: |
pytest pixell/tests/ -s
build_wheels_linux:
name: Build wheels on Linux
runs-on: ubuntu-latest
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
os: [ubuntu-20.04]
cp: [cp38, cp39, cp310, cp311]
include:
- cp: cp38
numpyver: "1.20"
- cp: cp39
numpyver: "1.20"
- cp: cp310
numpyver: "1.22"
- cp: cp311
numpyver: "1.22"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
name: Install Python
with:
python-version: '3.8'
- name: Install cibuildwheel and other dependencies
run: |
python -m pip install -U pip
python -m pip install -U setuptools
python -m pip install --upgrade pip setuptools wheel
python -m pip install pytest-cov numpy "Cython<3.0.4"
python -m pip install cibuildwheel
- name: Test and build wheels
run: |
ln -s $FC $(dirname $(which $FC))/gfortran
bash scripts/build_wheels.sh
env:
CIBW_ENVIRONMENT: OMP_NUM_THREADS=2
OPENBLAS_NUM_THREADS=2
CIBW_BEFORE_BUILD: "python -m pip install numpy==${{ matrix.numpyver }} scipy 'cython<3.0.4'"
CIBW_BUILD_VERBOSITY: 3
# If users are still on 32 bit systems or PPC they should build from source.
CIBW_BUILD: "${{ matrix.cp }}-manylinux_{x86_64,aarch64}"
CIBW_TEST_REQUIRES: pytest
CIBW_TEST_COMMAND: >
cd /
pytest {project}/pixell/tests -s
PYTHON: "python"
PIP: "pip"
- uses: actions/upload-artifact@v2
with:
path: ./wheelhouse/*.whl
build_wheels_macos:
name: Build wheels on MacOS
runs-on: macos-latest
env:
CC: gcc-12
CXX: gcc-12
FC: gfortran-12
DUCC0_NUM_THREADS: 2
strategy:
# Ensure that a wheel builder finishes even if another fails
fail-fast: false
matrix:
os: [macos-latest]
# We don't build 3.7 wheels for MacOS because that's x86 only.
cp: [cp38, cp39, cp310, cp311]
include:
- cp: cp38
numpyver: "1.20"
- cp: cp39
numpyver: "1.20"
- cp: cp310
numpyver: "1.22"
- cp: cp311
numpyver: "1.22"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
name: Install Python
with:
python-version: '3.9'
- name: Install cibuildwheel and other dependencies
run: |
python -m pip install -U pip
python -m pip install -U setuptools
python -m pip install --upgrade pip setuptools wheel
python -m pip install pytest-cov numpy "Cython<3.0.4"
python -m pip install cibuildwheel
- name: Test and build wheels
run: |
ln -s $FC $(dirname $(which $FC))/gfortran
bash scripts/build_wheels.sh
env:
CIBW_ENVIRONMENT: OMP_NUM_THREADS=2
OPENBLAS_NUM_THREADS=2
CIBW_BEFORE_BUILD: "python -m pip install numpy==${{ matrix.numpyver }} scipy 'cython<3.0.4'"
CIBW_BUILD_VERBOSITY: 3
# To build for both x86_64 and arm64, uncomment the following lines.
# That would require a fortran compiler that can cross-comile from
# x86_64 to arm64, as well as an OMP library that's cross-compiled.
# CIBW_BUILD: "${{ matrix.cp }}-macosx_{x86_64,arm64}"
CIBW_BUILD: "${{ matrix.cp }}-macosx_x86_64"
#CIBW_ARCHS_MACOS: "x86_64 arm64"
CIBW_ARCHS_MACOS: "x86_64"
CIBW_TEST_REQUIRES: pytest
CIBW_TEST_COMMAND: >
cd /
pytest {project}/pixell/tests -s
# Cannot test arm64 on non-native runner
CIBW_TEST_SKIP: "*_arm64"
PYTHON: "python"
PIP: "pip"
- uses: actions/upload-artifact@v2
with:
path: ./wheelhouse/*.whl
build_sdist:
name: Build source distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
name: Install Python
with:
python-version: '3.8'
- name: Build sdist
run: |
python -m pip install -U pip
python -m pip install -U setuptools
python -m pip install --upgrade pip setuptools wheel
python -m pip install "Cython<3.0.4"
python -m pip install numpy
python setup.py sdist
- uses: actions/upload-artifact@v2
with:
path: dist/*.tar.gz
upload_pypi:
needs: [build_wheels_linux, build_wheels_macos, build_sdist]
runs-on: ubuntu-latest
# upload to PyPI on every tag starting with 'v'
if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v')
# alternatively, to publish when a GitHub Release is created, use the following rule:
# if: github.event_name == 'release' && github.event.action == 'published'
steps:
- uses: actions/download-artifact@v2
with:
name: artifact
path: dist
- uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.PYPI_TOKEN }}
# To test: repository_url: https://test.pypi.org/legacy/
# Automatically upload builds to PyPI test when all tests pass.
# Requires some thought about versioning before activating.
# upload_pypi_test:
# needs: [build_wheels_linux, build_wheels_macos, build_sdist]
# runs-on: ubuntu-latest
# environment:
# name: testpypi
# url: https://test.pypi.org/p/pixell
# # Upload to pypi testing on every successful test run and build generation
# steps:
# - uses: actions/download-artifact@v2
# with:
# name: artifact
# path: dist
# - uses: pypa/gh-action-pypi-publish@release/v1
# with:
# repository-url: https://test.pypi.org/legacy/
# user: __token__
# password: ${{ secrets.PYPI_TEST_TOKEN }}