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1. prequal prequal Public

   PREQUAL: a pre-alignment quality filter for comparative sequence analyses

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2. Divvier Divvier Public

   A program for divvying or partially filtering multiple sequence alignments

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3. modelomatic modelomatic Public

   Modelomatic - A software for model selection across state-spaces

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4. MSAscorer MSAscorer Public

   A simple program for calculating pairwise true positive and false negatives from a test MSA using a reference MSA

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