Medicine By Design Microbiome Project
Explore and attempt to improve upon classification of healthy and nonhealthy patients based on microbiome species frequencies.
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data: where data goes
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data/raw: where raw downloaded data goes
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data/preprocessed: where any data that was produced by our own manipulation goes
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src: where all preprocessing + analysis scripts/notebooks go
- Dockerfile: makes docker image for this project
- build_image.sh: runs command to build image
- run_docker_it.sh: run an interactive session in Docker container. Note you might have to change some filepaths in this file for it to work on your machine
Sing, J. C., Whitley, O., & Davis, S. (2023). Diagnostic Potential of Shallow Depth Gut Metagenomics Sequencing for Atherosclerotic Cardiovascular Disease Risk Stratification. https://doi.org/10.1101/2023.10.02.560614