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Revert intensity pairs pr765 #784

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merged 36 commits into from
May 28, 2024

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@trishorts trishorts commented May 28, 2024

PR 765 was an attempt to improve the speed of creating intensity pairs for spectrum similarity calculations. The PR had unfortunate side effects. This PR reverts the key method for finding intensity pairs while retaining some inconsequential code improvements such as variable renaming.

MICHAEL SHORTREED and others added 30 commits November 18, 2021 12:30
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codecov bot commented May 28, 2024

Codecov Report

Attention: Patch coverage is 97.67442% with 1 lines in your changes are missing coverage. Please review.

Project coverage is 75.27%. Comparing base (84b2e9d) to head (98c9f6f).

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #784      +/-   ##
==========================================
+ Coverage   75.25%   75.27%   +0.01%     
==========================================
  Files         195      195              
  Lines       30484    30482       -2     
  Branches     3058     3059       +1     
==========================================
+ Hits        22942    22944       +2     
+ Misses       7027     7024       -3     
+ Partials      515      514       -1     
Files Coverage Δ
mzLib/Omics/SpectrumMatch/LibrarySpectrum.cs 93.22% <100.00%> (ø)
...b/MassSpectrometry/MzSpectra/SpectralSimilarity.cs 98.94% <97.61%> (+1.39%) ⬆️

@trishorts trishorts added bug Maintenance The user isn't impacted by it, it's purely behind the scenes ready for review labels May 28, 2024
@nbollis nbollis merged commit cfc2f28 into smith-chem-wisc:master May 28, 2024
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elaboy pushed a commit to elaboy/mzLib-Fork that referenced this pull request Aug 5, 2024
* correct Within calculation

* update unit tests

* this is the spot

* add space

* unused using

* vnc

* revert IntensityPairs method from pr 765

---------

Co-authored-by: MICHAEL SHORTREED <mrshortreed@wisc.edu>
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4 participants