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update changelog
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johanneskoester committed Apr 22, 2021
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6 changes: 6 additions & 0 deletions CHANGELOG.rst
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[6.2.0] - 2021-04-22
====================
- Support for integration of foreign workflow management systems by introducing a ``handover`` directive that passes on all resources to a particular rule (which can then invoke another workflow management system). See the docs ("Integrating foreign workflow management systems") (@johanneskoester).
- Behavior improvement for temp handling of checkpoint rules (@epruesse).
- Several improvements in the docs (@johanneskoester).

[6.1.2] - 2021-04-20
====================
- Fixed several glitches in paramspace implementation (handling of bools, returning scalar values) (@kpj).
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2 changes: 1 addition & 1 deletion docs/snakefiles/foreign_wms.rst
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Expand Up @@ -18,7 +18,7 @@ Consider the following example:
fasta="data/genome.fasta",
gtf="data/genome.gtf",
output:
"multiqc/multiqc_report.html",
"multiqc/broadPeaks/multiqc_report.html",
params:
pipeline="nf-core/chipseq",
revision="1.2.1",
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4 changes: 4 additions & 0 deletions docs/snakefiles/rules.rst
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Expand Up @@ -1417,6 +1417,10 @@ From Snakemake 5.31 on (inspired by `JUDI <https://pyjudi.readthedocs.io>`_), th
shell:
"touch {output}"
In above example, **please note** the Python ``f``-string formatting (the ``f`` before the initial quotes) applied to the input and output file strings that contain ``paramspace.wildcard_pattern``.
This means that the file that is registered as input or output file by Snakemake does not contain a wildcard ``{paramspace.wildcard_pattern}``, but instead this item is replaced by a pattern of multiple wildcards derived from the columns of the paramter space dataframe.
This is done by the Python ``f``-string formatting before the string is registered in the rule.
Given that `params.tsv` contains:
.. code-block:: none
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