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fix: only consider context of shell command for technical switches if called from snakemake rules. #1213

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merged 2 commits into from Nov 2, 2021

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johanneskoester
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@johanneskoester johanneskoester commented Oct 11, 2021

Description

Fixes the issue raised in snakemake/snakemake-wrappers#403.

QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

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sonarcloud bot commented Oct 26, 2021

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

@johanneskoester johanneskoester merged commit 4816a58 into main Nov 2, 2021
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@johanneskoester johanneskoester deleted the fix-shell-context branch Nov 2, 2021
pvandyken pushed a commit to pvandyken/snakemake that referenced this pull request Nov 15, 2021
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