…akemake/pull/533/files#diff-a4bcd796d9ae03f8be3597dd3f85b5ac873f52efc71b3d0790cfb566d9725330

…ious parameter, code or software env changes

### Description

<!--Add envmodules keyword to vim syntax-->

### QC
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* [ ] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

…nakemake#1921)

### Description

This just removes a single period in the documentation section about the
multiext function, so that this, with a redundant period:

```
expand("some/plot.{ext}", ext=[".pdf", ".svg", ".png"])
```

becomes this, matching the expected output:

```
expand("some/plot{ext}", ext=[".pdf", ".svg", ".png"])
```

Fixes snakemake#1012.

### QC
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language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.16.2](snakemake/snakemake@v7.16.1...v7.16.2)
(2022-10-26)


### Bug Fixes

* fix false rerun triggering downstream of checkpoints due to spurious
parameter, code or software env changes
([638ea86](snakemake@638ea86))
* remove redundant dot in expand call in multiext documentation
([snakemake#1921](snakemake#1921))
([278beaa](snakemake@278beaa))

---
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…e software envs from the caching hash value, which can be handy e.g. for download rules where the software version does not affect the result) (snakemake#1933)

### Description

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language nor the behavior or functionalities of Snakemake).

### Description

The value of `os.pathconf(self._incomplete_path, "PC_NAME_MAX")` is
cached in an attribute `Persistence._max_len` -- this avoids repeatedly
querying the operating system for the same configuration information
every time `marked_incomplete()` is called on a file/job output. (Note:
this will dramatically speed up Snakemake DAG building on compute
clusters where `os.pathconf()` is slow to return and the number of files
checked for incompleteness is very large.)

### QC
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language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.17.0](snakemake/snakemake@v7.16.2...v7.17.0)
(2022-10-27)


### Features

* allow to define the cache mode per rule (this enables to exclude
software envs from the caching hash value, which can be handy e.g. for
download rules where the software version does not affect the result)
([snakemake#1933](snakemake#1933))
([715e618](snakemake@715e618))


### Performance Improvements

* cached os.pathconf() call in _record_path()
([snakemake#1920](snakemake#1920))
([551badb](snakemake@551badb))

---
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… structure, such that imports from e.g. scripts also work with remote modules (if specified as additional input files with workflow.source_path) (snakemake#1936)

### Description

<!--Add a description of your PR here-->

### QC
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language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.17.1](snakemake/snakemake@v7.17.0...v7.17.1)
(2022-10-28)


### Bug Fixes

* change source cache entries to keep the original name and folder
structure, such that imports from e.g. scripts also work with remote
modules (if specified as additional input files with
workflow.source_path)
([snakemake#1936](snakemake#1936))
([c34f3f6](snakemake@c34f3f6))

---
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…s. This allows to import from Python modules next to scripts while deploying the workflow as a snakemake module, even from remote locations. (snakemake#1940)

### QC
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* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.17.2](snakemake/snakemake@v7.17.1...v7.17.2)
(2022-10-28)


### Bug Fixes

* Consider source cache when setting search path for python scripts.
This allows to import from Python modules next to scripts while
deploying the workflow as a snakemake module, even from remote
locations. ([snakemake#1940](snakemake#1940))
([27be1d4](snakemake@27be1d4))

---
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…sting wildcard values from the consuming job. This can dramatically reduce ambiuity problems. Thanks to @descostesn! (snakemake#1939)

Only fall back to generic regex based matching if the wildcard based
approach does not work. This is inspired by a chat with @descostesn.

<!-- Make sure that you can tick the boxes below. -->

* [x] The PR contains a test case for the changes or the changes are
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this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.18.0](snakemake/snakemake@v7.17.2...v7.18.0)
(2022-10-31)


### Features

* first try to match output files against input files while persisting
wildcard values from the consuming job. This can dramatically reduce
ambiuity problems. Thanks to
[@descostesn](https://github.com/descostesn)!
([snakemake#1939](snakemake#1939))
([d093907](snakemake@d093907))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

…o 2.3.0 (snakemake#1945)

Bumps
[marocchino/sticky-pull-request-comment](https://github.com/marocchino/sticky-pull-request-comment)
from 2.2.1 to 2.3.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/marocchino/sticky-pull-request-comment/releases">marocchino/sticky-pull-request-comment's
releases</a>.</em></p>
<blockquote>
<h2>v2.3.0</h2>
<ul>
<li>Support glob path</li>
<li>Add <code>follow_symbolic_links</code> for path</li>
<li>Add <code>ignore_empty</code> for skip empty body</li>
<li>Update README for new output syntax</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/marocchino/sticky-pull-request-comment/commit/adca94abcaf73c10466a71cc83ae561fd66d1a56"><code>adca94a</code></a>
Merge pull request <a
href="https://github-redirect.dependabot.com/marocchino/sticky-pull-request-comment/issues/799">#799</a>
from marocchino/dependabot/npm_and_yarn/octokit/graph...</li>
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href="https://github.com/marocchino/sticky-pull-request-comment/commit/af76947473de144ee8fd8a8a2a0e5b2f392f5626"><code>af76947</code></a>
build(deps): Bump <code>@​octokit/graphql-schema</code> from 12.11.0 to
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from marocchino/dependabot/npm_and_yarn/typescript-...</li>
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href="https://github.com/marocchino/sticky-pull-request-comment/commit/f4ae94070a1b2cc47b7a126d9271c48c3dd7e803"><code>f4ae940</code></a>
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from marocchino/dependabot/npm_and_yarn/jest-circus...</li>
<li><a
href="https://github.com/marocchino/sticky-pull-request-comment/commit/97e16fd48982b5a81b0ef88b530b54e8995e27c4"><code>97e16fd</code></a>
Merge pull request <a
href="https://github-redirect.dependabot.com/marocchino/sticky-pull-request-comment/issues/792">#792</a>
from samkio/feature/glob</li>
<li><a
href="https://github.com/marocchino/sticky-pull-request-comment/commit/da2f89048f71a00bda8f6df93622691adf401be3"><code>da2f890</code></a>
build(deps-dev): Bump eslint-plugin-jest from 27.1.2 to 27.1.3</li>
<li><a
href="https://github.com/marocchino/sticky-pull-request-comment/commit/ba82cbc35c1c35bab4a3bca541920a5d9e4d6f60"><code>ba82cbc</code></a>
build(deps-dev): Bump <code>@​typescript-eslint/parser</code> from
5.40.1 to 5.41.0</li>
<li><a
href="https://github.com/marocchino/sticky-pull-request-comment/commit/b8644f1ac559a999648c96168f58c769bb1af49a"><code>b8644f1</code></a>
🔀 Merge pull request <a
href="https://github-redirect.dependabot.com/marocchino/sticky-pull-request-comment/issues/789">#789</a>
from marocchino/dependabot/npm_and_yarn/eslint-8.26.0</li>
<li><a
href="https://github.com/marocchino/sticky-pull-request-comment/commit/95c224a6ab058ad5a70e45bb6d16f8b221078bfb"><code>95c224a</code></a>
🔀 Merge pull request <a
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from marocchino/dependabot/npm_and_yarn/types/node-...</li>
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…akemake/pull/533/files#diff-a4bcd796d9ae03f8be3597dd3f85b5ac873f52efc71b3d0790cfb566d9725330

…nakemake#2065)

This PR does two main things:

- Update the vendored versioneer, which uses a configuration in
`pyproject.toml`, so clean-up `setup.cfg`
- A follow-up from
[snakemake#2026](snakemake#2026) is that most
of `setup.py` was to be cleaned-up, but this somehow missed that PR!
Keep the repeated `name="snakemake"` metadata in setup.py for now to
avoid a [GitHub bug](https://github.com/orgs/community/discussions/6456)

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* [ ] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [ ] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

…runtime="1d") (snakemake#1861)

### Description

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### QC
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* [x] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

### Description

I ran into a bug in the `job_status` method in which the variable
`sacct_error` is set to `None`, but then later is printed using
`sacct_error.strip()`, which throws this error (with gently redacted
filepaths):

```
Job 146 has been submitted with SLURM jobid 154129239 (log: .snakemake/slurm_logs/rule_sra_to_fastq/154129239.log)
Traceback (most recent call last):
  File "/path_to_project/venv/lib/python3.8/site-packages/snakemake/executors/slurm/slurm_submit.py", line 310, in job_status
    out = subprocess.check_output(
  File "/shared/anaconda/python3-2020.07-mamba/lib/python3.8/subprocess.py", line 411, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
  File "/shared/anaconda/python3-2020.07-mamba/lib/python3.8/subprocess.py", line 512, in run
    raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command 'scontrol show jobid -dd 154129189' returned non-zero exit status 1.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/path_to_project/venv/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 838, in _wait_thread
    asyncio.run(self._wait_for_jobs())
  File "/shared/anaconda/python3-2020.07-mamba/lib/python3.8/asyncio/runners.py", line 43, in run
    return loop.run_until_complete(main)
  File "/shared/anaconda/python3-2020.07-mamba/lib/python3.8/asyncio/base_events.py", line 616, in run_until_complete
    return future.result()
  File "/path_to_project/venv/lib/python3.8/site-packages/snakemake/executors/slurm/slurm_submit.py", line 354, in _wait_for_jobs
    status = await self.job_status(j.jobid)
  File "/path_to_project/venv/lib/python3.8/site-packages/snakemake/executors/slurm/slurm_submit.py", line 322, in job_status
    f"Error getting status of slurm job {jobid}:\n    sacct error: {sacct_error.strip()}\n    scontrol error: {e.stderr.strip()}"
AttributeError: 'NoneType' object has no attribute 'strip'
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2023-01-13T024214.712457.snakemake.log
'NoneType' object has no attribute 'strip'
``` 
If `sacct_error` is still `None` on line 322, I think the only
explanations would be:

1. The call to `subprocess.check_output` on line 292 returned an
`IndexError`, which was caught on line 304 and ignored, or
2. The call to `subprocess.check_output` on line 292 returned `None` for
the standard error stream, which it shouldn't have done: [That only
happens](https://docs.python.org/3/library/asyncio-subprocess.html#asyncio.subprocess.Process.stderr)
if called with the `stderr=None` parameter, which it wasn't.

There's nothing I can see that's checking whether `sacct_error` is
`None`, so my first thought was just to change the declaration of the
variable on line 289 to something like `sacct_error = '(none)'` so it
prints nicely, but that looks funny *and* doesn't avoid scenario number
2 above, which I suppose could happen if the parameters are changed one
day, or something freaky happens with the `subprocess.PIPE` that I
honestly don't understand very well.

In any case, this fix isn't particularly sophisticated, but it fixes the
`AttributeError` I ran into without modifying any of the logic and
accommodates a path (`except IndexError as e`) that's at least common
enough to be included here.

### QC
<!-- Make sure that you can tick the boxes below. -->

* [ ] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [ ] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de>
Co-authored-by: Johannes Köster <johannes.koester@uni-due.de>

### Description

This moves the static project metadata (again) to setup.cfg, which has
had long-standing support with
[setuptools](https://setuptools.pypa.io/en/latest/userguide/declarative_config.html).

This resolves an issue with limitations of project metadata in
pyproject.toml by release-please.

### QC

* [ ] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [ ] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.20.0](snakemake/snakemake@v7.19.1...v7.20.0)
(2023-01-18)


### Features

* add tes token
([snakemake#1966](snakemake#1966))
([59a8fa0](snakemake@59a8fa0))
* Add token auth to GitLab/GitHub hosting providers
([snakemake#1761](snakemake#1761))
([e03a3b4](snakemake@e03a3b4)),
closes [snakemake#1301](snakemake#1301)
* allow for human friendly resource definitions (e.g. mem="5GB",
runtime="1d")
([snakemake#1861](snakemake#1861))
([24610ac](snakemake@24610ac))


### Bug Fixes

* 🐛 - fix hyperlink
([snakemake#2046](snakemake#2046))
([9519d31](snakemake@9519d31))
* Catch missing error stream in Slurm executor
([snakemake#2063](snakemake#2063))
([c21fc7e](snakemake@c21fc7e))
* correctly parse empty values in config cli
([snakemake#2032](snakemake#2032))
([1b0689d](snakemake@1b0689d))
* Correctly parse UserDicts in executors
([snakemake#2016](snakemake#2016))
([e3926fa](snakemake@e3926fa))
* Fix handling of --jobs in no-exec state
([snakemake#2029](snakemake#2029))
([e8e8222](snakemake@e8e8222))
* make `--show-failed-logs` handle empty log files
([snakemake#2039](snakemake#2039))
([683c6f2](snakemake@683c6f2)),
closes [snakemake#2023](snakemake#2023)
* make python version check more robust
([snakemake#2058](snakemake#2058))
([e685621](snakemake@e685621))
* parsing error when last line is comment
([snakemake#2054](snakemake#2054))
([a928dd4](snakemake@a928dd4))
* prevent overriding of retries when set to 0
([snakemake#2053](snakemake#2053))
([a328f3e](snakemake@a328f3e))
* propagate attempt count from group to subjobs
([snakemake#2052](snakemake#2052))
([da3f1c0](snakemake@da3f1c0))
* remove overflow from rulegraph div in report
([9a0aaa7](snakemake@9a0aaa7))
* skip type checks of missing dir in touch mode
([snakemake#2051](snakemake#2051))
([ae00c25](snakemake@ae00c25))
* slurm default_resources quoting
([snakemake#2043](snakemake#2043))
([47d3fc3](snakemake@47d3fc3))
* Update list of python versions in classifiers
([snakemake#2020](snakemake#2020))
([7a98100](snakemake@7a98100))
* use short argument name for `--chdir` for compatibility with Slurm
<=v17 ([snakemake#2040](snakemake#2040))
([a9ed3ec](snakemake@a9ed3ec))


### Documentation

* Fix typo in SLURM help text
([snakemake#2049](snakemake#2049))
([79b7025](snakemake@79b7025))
* mention XDG_CACHE_HOME
([snakemake#2057](snakemake#2057))
([ec2ef45](snakemake@ec2ef45))

---
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Please](https://github.com/googleapis/release-please). See
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Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

…ewly introduced `single_wildcard` argument of `Paramspace`. (snakemake#2069)

### Description

<!--Add a description of your PR here-->

### QC
<!-- Make sure that you can tick the boxes below. -->

* [x] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

…es (snakemake#2073)

### Description

If I understand the mechanics correctly, jobs in job groups executed on
clusters get "postprocessed", and as part of this their output files are
touched. However, the order in which this happened was not necessarily a
topological order, meaning that output files of dependent rules could be
touched in the "wrong" order. See
snakemake#789

This simple change just ensures that jobs are post-processed in
topological order, which should solve the above issue.

If desirable, I could also writing a test for the above behaviour to
catch potential future issues.

### QC
* [ ] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

Co-authored-by: Johannes Köster <johannes.koester@uni-due.de>

…#2036)

Fix error in parse jobid and jobidraw. jobid and jobidraw might be
different.

### Description

--slurm command report such error:

```
  File "~/.local/lib/python3.11/site-packages/snakemake/executors/slurm/slurm_submit.py", line 328, in job_status
    return res[jobid]  # == status
           ~~~^^^^^^^
KeyError: '1043166'
```

This is because sacct command report JobId but not JobIdRaw in the first
column, which cause error in indexing the job status in the res dict.
For example,

```
$ sacct -P -n --format=JobId,JobIdRaw,State -j 1043166

1043074_91|1043166|COMPLETED
1043074_91.batch|1043166.batch|COMPLETED
1043074_91.extern|1043166.extern|COMPLETED
1043074_91.0|1043166.0|COMPLETED
```

replacing `-b` with `--format=JobIdRaw,State` can have a more robust
output.

Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de>

….0.2 (snakemake#1914)

Bumps
[amannn/action-semantic-pull-request](https://github.com/amannn/action-semantic-pull-request)
from 4.6.0 to 5.0.2.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/amannn/action-semantic-pull-request/releases">amannn/action-semantic-pull-request's
releases</a>.</em></p>
<blockquote>
<h2>v5.0.2</h2>
<h3><a
href="https://github.com/amannn/action-semantic-pull-request/compare/v5.0.1...v5.0.2">5.0.2</a>
(2022-10-17)</h3>
<h3>Bug Fixes</h3>
<ul>
<li>Upgrade <code>@actions/core</code> to avoid deprecation warnings (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/208">#208</a>)
(<a
href="https://github.com/amannn/action-semantic-pull-request/commit/91f4126c9e8625b9cadd64b02a03018fa22fc498">91f4126</a>)</li>
</ul>
<h2>v5.0.1</h2>
<h3><a
href="https://github.com/amannn/action-semantic-pull-request/compare/v5.0.0...v5.0.1">5.0.1</a>
(2022-10-14)</h3>
<h3>Bug Fixes</h3>
<ul>
<li>Upgrade GitHub Action to use Node v16 (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/207">#207</a>)
(<a
href="https://github.com/amannn/action-semantic-pull-request/commit/6282ee339b067cb8eab05026f91153f873ad37fb">6282ee3</a>)</li>
</ul>
<h2>v5.0.0</h2>
<h2><a
href="https://github.com/amannn/action-semantic-pull-request/compare/v4.6.0...v5.0.0">5.0.0</a>
(2022-10-11)</h2>
<h3>⚠ BREAKING CHANGES</h3>
<ul>
<li>Enum options need to be newline delimited (to allow whitespace
within them) (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/205">#205</a>)</li>
</ul>
<h3>Features</h3>
<ul>
<li>Enum options need to be newline delimited (to allow whitespace
within them) (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/205">#205</a>)
(<a
href="https://github.com/amannn/action-semantic-pull-request/commit/c906fe1e5a4bcc61624931ca94da9672107bd448">c906fe1</a>)</li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/amannn/action-semantic-pull-request/blob/main/CHANGELOG.md">amannn/action-semantic-pull-request's
changelog</a>.</em></p>
<blockquote>
<h3><a
href="https://github.com/amannn/action-semantic-pull-request/compare/v5.0.1...v5.0.2">5.0.2</a>
(2022-10-17)</h3>
<h3>Bug Fixes</h3>
<ul>
<li>Upgrade <code>@actions/core</code> to avoid deprecation warnings (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/208">#208</a>)
(<a
href="https://github.com/amannn/action-semantic-pull-request/commit/91f4126c9e8625b9cadd64b02a03018fa22fc498">91f4126</a>)</li>
</ul>
<h3><a
href="https://github.com/amannn/action-semantic-pull-request/compare/v5.0.0...v5.0.1">5.0.1</a>
(2022-10-14)</h3>
<h3>Bug Fixes</h3>
<ul>
<li>Upgrade GitHub Action to use Node v16 (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/207">#207</a>)
(<a
href="https://github.com/amannn/action-semantic-pull-request/commit/6282ee339b067cb8eab05026f91153f873ad37fb">6282ee3</a>)</li>
</ul>
<h2><a
href="https://github.com/amannn/action-semantic-pull-request/compare/v4.6.0...v5.0.0">5.0.0</a>
(2022-10-11)</h2>
<h3>⚠ BREAKING CHANGES</h3>
<ul>
<li>Enum options need to be newline delimited (to allow whitespace
within them) (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/205">#205</a>)</li>
</ul>
<h3>Features</h3>
<ul>
<li>Enum options need to be newline delimited (to allow whitespace
within them) (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/205">#205</a>)
(<a
href="https://github.com/amannn/action-semantic-pull-request/commit/c906fe1e5a4bcc61624931ca94da9672107bd448">c906fe1</a>)</li>
</ul>
</blockquote>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/01d5fd8a8ebb9aafe902c40c53f0f4744f7381eb"><code>01d5fd8</code></a>
chore: Release 5.0.2 [skip ci]</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/91f4126c9e8625b9cadd64b02a03018fa22fc498"><code>91f4126</code></a>
fix: Upgrade <code>@actions/core</code> to avoid deprecation warnings
(<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/208">#208</a>)</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/0a457e272673a33e52c9ade9318b3c115e566f60"><code>0a457e2</code></a>
ci: Fix branch name in dist check (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/209">#209</a>)</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/570204e54c9030a6cb7ef781c492e76c1798d1c0"><code>570204e</code></a>
chore: Release 5.0.1 [skip ci]</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/6282ee339b067cb8eab05026f91153f873ad37fb"><code>6282ee3</code></a>
fix: Upgrade GitHub Action to use Node v16 (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/207">#207</a>)</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/7c194c28652f0faf98ad437c6cf291406d387b43"><code>7c194c2</code></a>
docs: Use latest major [skip ci]</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/5369185dc9812f174fa58b03b13b79920b68f8e1"><code>5369185</code></a>
chore: Release 5.0.0 [skip ci]</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/c906fe1e5a4bcc61624931ca94da9672107bd448"><code>c906fe1</code></a>
feat!: Enum options need to be newline delimited (to allow whitespace
within ...</li>
<li><a
href="https://github.com/amannn/action-semantic-pull-request/commit/b314c1bec341c714425c0aa43e142b35c12759a0"><code>b314c1b</code></a>
docs: Improve example for composing outputs (<a
href="https://github-redirect.dependabot.com/amannn/action-semantic-pull-request/issues/206">#206</a>)</li>
<li>See full diff in <a
href="https://github.com/amannn/action-semantic-pull-request/compare/v4.6.0...v5.0.2">compare
view</a></li>
</ul>
</details>
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…his way, pandas parameters do not lead to spurious rerun triggers. (snakemake#2080)

### Description

<!--Add a description of your PR here-->

### QC
<!-- Make sure that you can tick the boxes below. -->

* [x] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

…to report mark arguments (snakemake#2081)

### Description

<!--Add a description of your PR here-->

### QC
<!-- Make sure that you can tick the boxes below. -->

* [x] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

🤖 I have created a release *beep* *boop*
---


##
[7.21.0](snakemake/snakemake@v7.20.0...v7.21.0)
(2023-01-30)


### Features

* ability to encode paramspaces into a single wildcard, via the newly
introduced `single_wildcard` argument of `Paramspace`.
([snakemake#2069](snakemake#2069))
([728ab3c](snakemake@728ab3c))
* allow input, output, and params to be used in functions passed to
report mark arguments
([snakemake#2081](snakemake#2081))
([93ff8b6](snakemake@93ff8b6))


### Bug Fixes

* more robust encoding of params in persistent metadata storage. This
way, pandas parameters do not lead to spurious rerun triggers.
([snakemake#2080](snakemake#2080))
([106a4c3](snakemake@106a4c3))
* more robust parsing of sacct output in slurm executor
([snakemake#2036](snakemake#2036))
([fe651f8](snakemake@fe651f8))
* Postprocess job groups in toposorted order for correct touch times
([snakemake#2073](snakemake#2073))
([10b5849](snakemake@10b5849))

---
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Please](https://github.com/googleapis/release-please). See
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Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

…nakemake#2092)

### Description

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### QC
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* [x] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).