Use HTTPS for links where available #325
Merged
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and fix at least one broken link found while checking.
bio-bwa.sourceforge.net, melpa.milkbox.net and redsymbol.net were excluded because they do not work in HTTPS.
The following links were found to be broken (in both http and https) and currently lack replacements:
http://toolkit.globus.org/toolkit/docs/latest-stable/gridftp/user/#globus-url-copy
http://watson.nci.nih.gov/~sdavis/blog/flexible_bioinformatics_pipelines_with_snakemake/