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Version 6.5.0
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@johanneskoester johanneskoester released this 22 Jun 19:28
· 1052 commits to main since this release
v6.5.0
4706700
  • Allow to set the default profile via the environment variable $SNAKEMAKE_PROFILE (@johanneskoester).
  • There is a new default resource tmpdir (by default reflects the system setting), which is automatically used for temporary files by shell commands and scripts which properly consider the usual environment variables like $TMP, $TEMP, $TMPDIR (@johanneskoester).
  • The CLI flags --jobs and --cores are now separated, with --cores being responsible for local cores and global cores in the cluster case, and --jobs being responsible for number of jobs. Still -j and --jobs works as a fallback for local execution (@johanneskoester).
  • Added the ability to overwrite resources via --set-resources (@johanneskoester).
  • Various fixes for Windows execution (@melund).
  • Fixed a bug with fractional resources (@johanneskoester).
  • Fixed timeouts and other issues in google life science backend (@johanneskoester).
  • Fixed a bug with missing conda frontend definitions in subworkflows (@johanneskoester).
  • Skip envvar checking during linting (@johanneskoester).
  • Fixed a bug causing container images in modules to be ignored (@johanneskoester).
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