Uezu2016

iBioID proteomics data from Uezu et al., 2016, published in Science.

To access the raw data in R, install the package with devtools, and then access the data in inst/extdata using system.file and readxl (see example below). Or, if that sounds complicated, you can simply download the raw files from this repository, here.

devtools::install_github("soderling-lab/Uezu2016")

library(readxl)

# the Uezu2016 package contains the following files in inst/extdata:
epsd <- "ePSD_BioID-Supplementary-data.xlsx"
ipsd <- "iPSD_BioID-Supplementary-data.xlsx"

# access your system's path to the data
myfile <- system.file("extdata", ipsd, package="Uezu2016")

readxl::excel_sheets(myfile)

# [1] "Table 1" "Table 2" "Table 3" 
# ^MS info, Sample info, and the raw (peptide-level) data

df <- readxl::read_excel(myfile, sheet = 3) 

Citation

@article{Uezu2016,
	doi = {10.1126/science.aag0821},
	url = {https://doi.org/10.1126%2Fscience.aag0821},
	year = 2016,
	month = {sep},
	publisher = {American Association for the Advancement of Science ({AAAS})},
	volume = {353},
	number = {6304},
	pages = {1123--1129},
	author = {A. Uezu and D. J. Kanak and T. W. A. Bradshaw and E. J. Soderblom and C. M. Catavero and A. C. Burette and R. J. Weinberg and S. H. Soderling},
	title = {Identification of an elaborate complex mediating postsynaptic inhibition},
	journal = {Science}
}