Add new mmseqs commit · soedinglab/plass@1e6130b

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Add new mmseqs commit

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martin-steinegger committed Sep 6, 2018

1 parent 3915dd1 commit 1e6130b

+2 −2		data/CMakeLists.txt
+2 −2		data/easycluster.sh
+16 −17		data/linclust.sh
+59 −57		src/CommandDeclarations.h
+38 −38		src/alignment/BandedNucleotideAligner.h
+1,101 −1,100		src/alignment/StripedSmithWaterman.cpp
+34 −15		src/commons/Parameters.cpp
+1 −1		src/commons/Parameters.h
+13 −6		src/commons/ProfileStates.cpp
+1 −1		src/commons/ProfileStates.h
+13 −7		src/mmseqs.cpp
+69 −69		src/prefiltering/KmerGenerator.h
+77 −77		src/test/TestExtendedSubstitutionMatrix.cpp
+8 −12		src/util/createdb.cpp
+16 −9		src/util/createtsv.cpp
+176 −165		src/util/kmermatcher.cpp
+15 −11		src/util/offsetalignment.cpp
+57 −25		src/util/rescorediagonal.cpp
+1 −1		src/util/result2repseq.cpp
+1 −1		src/util/shellcompletion.cpp
+1 −8		src/util/swapresults.cpp
+1 −0		src/workflow/CMakeLists.txt
+1 −4		src/workflow/EasyCluster.cpp
+72 −0		src/workflow/EasyLinclust.cpp
+2 −1		src/workflow/EasySearch.cpp
+9 −2		src/workflow/Linclust.cpp
+2 −3		src/workflow/Search.cpp