Multi Trial Upload: Remove duplicate upload #1168
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| - '**.md' | |
| jobs: | |
| test_breedbase: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: breedbase/breedbase:latest | |
| env: | |
| HOME: /root | |
| MODE: 'TESTING' | |
| SYSTEM: 'GITACTION' | |
| PGPASSWORD: postgres | |
| SGN_TEST_SERVER: http://test_breedbase:3010 | |
| SGN_REMOTE_SERVER_ADDR: selenium | |
| volumes: | |
| - ${{ github.workspace }}:/home/production/cxgn/sgn | |
| - ${{ github.workspace }}:/home/vagrant/cxgn/sgn | |
| options: --network-alias test_breedbase | |
| services: | |
| breedbase_db: | |
| image: postgres:12.9 | |
| env: | |
| POSTGRES_PASSWORD: postgres | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| selenium: | |
| image: selenium/standalone-firefox:3.141.59 | |
| volumes: | |
| - ${{ github.workspace }}:/home/production/cxgn/sgn | |
| - ${{ github.workspace }}:/home/vagrant/cxgn/sgn | |
| options: --health-cmd="curl --silent --head http://localhost:4444 || exit 1" | |
| steps: | |
| - name: Checkout sgn | |
| uses: actions/checkout@v4 | |
| - name: Run unit tests | |
| run: prove --recurse t/unit 2>/dev/null | |
| - name: Load/dump fixture database and build node modules | |
| run: | | |
| echo "--version" > ~/.proverc | |
| perl t/test_fixture.pl --dumpupdatedfixture | |
| rm ~/.proverc | |
| # work around run_all_patches.pl "what the heck - no TTY??" error | |
| # https://github.com/actions/runner/issues/241#issuecomment-842566950 | |
| shell: 'script --flush --quiet --return --command "bash --noprofile --norc -eo pipefail {0}"' | |
| - name: Run unit_fixture tests | |
| # need entrypoint.sh to start slurm | |
| # --nopatch to skip running fixture and db patches (already done in previous step) | |
| run: /entrypoint.sh --nopatch t/unit_fixture 2>/dev/null | |
| - name: Run unit_mech tests | |
| run: /entrypoint.sh --nopatch t/unit_mech | |
| # selenium tests for a moment as separate folders - will change once full solgs are ready | |
| # but anyway, it will is still fully functional for tests purpose | |
| - name: Run selenium tests 01_list | |
| run: /entrypoint.sh --nopatch t/selenium2/01_list 2>/dev/null | |
| - name: Run selenium tests 02_trial | |
| run: /entrypoint.sh --nopatch t/selenium2/02_trial 2>/dev/null | |
| - name: Run selenium tests dataset | |
| run: /entrypoint.sh --nopatch t/selenium2/03_dataset 2>/dev/null | |
| - name: Run selenium tests breeders | |
| run: /entrypoint.sh --nopatch t/selenium2/breeders 2>/dev/null | |
| - name: Run selenium tests onto | |
| run: /entrypoint.sh --nopatch t/selenium2/onto 2>/dev/null | |
| - name: Run selenium tests search | |
| run: /entrypoint.sh --nopatch t/selenium2/search 2>/dev/null | |
| - name: Run selenium tests stock | |
| run: /entrypoint.sh --nopatch t/selenium2/stock 2>/dev/null | |
| - name: Run selenium tests tools | |
| run: /entrypoint.sh --nopatch t/selenium2/tools 2>/dev/null |