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Fast implementation of the Neighbour-Joining method for phylogenetic inference
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somme89/rapidNJ
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Compilation: Dependencies: C++ (install on debian/ubuntu systems with the command "sudo apt install g++") On Linux and Mac run "make" from the root directory. Tip use "make -j" to comple on multiple cores Windows: Use Visual studio or cygwin to compile. The scripts vcvars32.sh or vcvars64.sh show an example on how to compile the binaries using cygwin commandline and a visual studio compiler Installation: Copy binaries from "./bin" to a suitable location. Version 2.3.2: -Fixed bug in bootstrap algorithm which caused the bootstrap values to be lower than the true value in most cases. -Fixed bug that caused the last two branches to have the wrong distance. For all publications and documentation see: https://birc.au.dk/software/rapidnj/ Pulication list: https://users-birc.au.dk/~cstorm/software/rapidnj/papers/SimonsenOthers2008_WABI.pdf https://users-birc.au.dk/~cstorm/software/rapidnj/papers/SimonsenOthers2011_CCIC.pdf https://users-birc.au.dk/~cstorm/software/rapidnj/papers/SimonsenPedersen2011_SAC.pdf Contact: Martin Simonsen - somme89@gmail.com
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Fast implementation of the Neighbour-Joining method for phylogenetic inference
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