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PhenomeScape: a Cytoscape app to identify differentially regulated sub-networks using known disease associations

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PhenomeScape

Installation

For simple installation visit http://apps.cytoscape.org/apps/phenomescape and click download.

Alternatively, click on phenomescape-1.0.jar above and click download. In the Cytoscape app manager (Apps->App Manager) choose "install from file" and select the downloaded jar.

A users guide can be found in PhenomeScape_Documentation.pdf

Example gene expression data is provided.

Change Log

Date Version Details
2022-June-27 v1.0.5 Update for compatibility with Cytoscape v3.9.1
2019-July-17 v1.0.4 Fixed column selection bugs and compatability with Cytoscape ≥ v3.6
2016-Sept-08 v1.0.3 Fixed table export bug occuring on some platforms
2016-Aug-31 v1.0.2 Improved Human to Mouse known disease gene mapping
2016-Aug-31 v1.0.1 Fixed bug causing app to fail with network names containing spaces

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