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ref #4 and #7, I think providing a small database using the GTDB 25k genomes, but with NCBI names/taxonomies instead, would be quite useful to many people.
the logic is that:
NCBI taxonomy is a mess, but people like it and are used to it;
since GTDB 25k is a nice low-redundancy collection of genomes, they're good to match against;
so we could provide just those genomes, but with NCBI taxonomy instead of GTDB taxonomy.
I guess we'd want to make sure the names are NCBI names where possible, and we'd want to provide a lineages CSV with it.
ref #4 and #7, I think providing a small database using the GTDB 25k genomes, but with NCBI names/taxonomies instead, would be quite useful to many people.
the logic is that:
I guess we'd want to make sure the names are NCBI names where possible, and we'd want to provide a lineages CSV with it.
see also sourmash-bio/sourmash#969
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