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[MRG] Backport fix for molecule type for --output-unassigned to 3.x #1160

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merged 1 commit into from
Aug 11, 2020

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@ctb ctb commented Aug 11, 2020

Backport #1156

  • Is it mergeable?
  • make test Did it pass the tests?
  • make coverage Is the new code covered?
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Was a spellchecker run on the source code and documentation after
    changes were made?

* add test for no unassigned hashes to output with gather

* add test for gather --output-unassigned with protein query

* fix two bugs in gather --output-unassigned

* Update tests/test_sourmash.py

Co-authored-by: Olga Botvinnik <olga.botvinnik@gmail.com>

Co-authored-by: Olga Botvinnik <olga.botvinnik@gmail.com>
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ctb commented Aug 11, 2020

(I'll merge this if/when the tests pass)

@ctb ctb changed the title Backport molecule type for --output-unassigned to 3.x [MRG] Backport fix for molecule type for --output-unassigned to 3.x Aug 11, 2020
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codecov bot commented Aug 11, 2020

Codecov Report

❗ No coverage uploaded for pull request base (stable@5092774). Click here to learn what that means.
The diff coverage is n/a.

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@@            Coverage Diff            @@
##             stable    #1160   +/-   ##
=========================================
  Coverage          ?   92.37%           
=========================================
  Files             ?       73           
  Lines             ?     5760           
  Branches          ?        0           
=========================================
  Hits              ?     5321           
  Misses            ?      439           
  Partials          ?        0           

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@ctb ctb merged commit 111b46e into stable Aug 11, 2020
@ctb ctb deleted the backport_unassigned_gather_fix_moltype branch August 11, 2020 02:14
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