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Update registration module to be compatible with current scikit-image 0.18 and Python 3.9 #1951

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mattcai
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@mattcai mattcai commented Jun 22, 2021

As scikit-image and Python versions continue to be updated, it is no longer feasible to use scikit-image 0.15.0 to get around . This pull request will make starfish compatible with scikit-image 0.18.*

Closes #1887 and #1950

Also means PR #1946 can be closed

…se_cross_correlation instead of the deprecated skimage.feature.register_translation
…g to scikit-image==0.15.0 just to use registration module.
@mattcai mattcai requested review from ttung and neuromusic June 22, 2021 01:43
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berl commented Jul 19, 2021

@mattcai @kevinyamauchi @neuromusic it looks like the Travis tests are failing here because the test environment is still at python=3.6, so scikit-image is 0.15, which doesn't have the skimage.registration module. Would changing the test to 3.7 (and officially dropping 3.6 support) do the trick?

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with #1963, this PR is no longer necessary, correct @njmei?

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njmei commented Oct 17, 2021

with #1963, this PR is no longer necessary, correct @njmei?

@neuromusic Yes, correct

@ttung ttung closed this Aug 25, 2022
@ttung ttung deleted the mcai-update_register_translation branch August 25, 2022 05:16
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register_translation is deprecated
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