User generated Database

[MonicaSteffi]

Dear All,
I would like to know is there any option we can use user generated database instead of the default one? I would like to use rrNDB database. https://rrndb.umms.med.umich.edu/static/download/. I could get copy number details but how i get annotation as mentioned in the package?

[srjun]

Dear Monica Thank you for your interests in panfp. My tool does not depend on 16S rRNA databases, but rather taxonomic information of representative sequences. The input is a feature-table with taxonomic assignment. Please let me know if you have further questions. Thanks, Se-Ran

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On Wed, Apr 7, 2021 at 12:24 AM Monica Steffi ***@***.***> wrote: Dear All, I would like to know is there any option we can use user generated database instead of the default one? I would like to use rrNDB database. https://rrndb.umms.med.umich.edu/static/download/. I could get copy number details but how i get annotation as mentioned in the package? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABIJJ2OQYQ2YHIBXOLSKVU3THPUAPANCNFSM42QBTSVA> .