Matlab (www.mathworks.com) or GNU Octave (https://www.gnu.org/software/octave/) and Brain Connectivity Toolbox (https://sites.google.com/site/bctnet/) are required for most. Additional requirements are listed in the comments for each script and some of these are included in the Resources folder.

DTI_nets/: Scripts for preprocessing and preparing DTI data for connectome analyses

CPM_R/: R versions of Finn et al.'s Connectome Predictive Modeling Matlab scripts

GMefficiency/: Calculate nodal efficiencies from individual gray matter networks (uses Tijms' similarity based extraction method)

GATcmd/: Graph Analysis Toolbox Command Line version

The bNets Toolbox is free to use for non-commercial purposes and comes with no warranty or guarantee. Use at your own risk. No technical support is provided. Please report bugs/errors to:

Shelli Kesler, PhD, srkesler@gmail.com