question about parser

[cynthiawqy]

Hi,
I am a newcomer who is learning about the software. The version I am currently using is 3.0.21. When I use the following command lines to run on the same cluster, I get an error.

command lines:
./ExaML-master/parser/parse-examl -s data/dna_rokasD1/dna_rokasD1.phy -q data/dna_rokasD1/dna_rokasD1.model -m DNA -n dna_rokasD1

./ExaML-master/examl/examl-AVX -m GAMMA -n ex_dna_rokasD1_p1 -s data/dna_rokasD1/dna_rokasD1.phy -t data/dna_rokasD1/start_trees/start_p1 -w data/dna_rokasD1

error: the address data type has a size of 64 bits on the current system while on the system on which you created the binary alignment file using the parser the address size is -910573176 bits!
Usually this indicates that the parser was executed on a 32-bit system while you are trying to run ExaML on a 64-bit system.
Please parse the binary alignment file on the same hardware on which you intend to run ExaML.

But I am using the same cluster. I do not know why this is so. Thanks in advance if you can help me.

Kind regards,
Cynthia

[stamatak]

could you please re-post your question on the raxml google group, as we provide support there? also, please check first if a similar questio has been asked before (I seem to remember that this was the case). Alexis

…

On 13.03.19 11:09, cynthiawqy wrote: Hi, I am a newcomer who is learning about the software. The version I am currently using is 3.0.21. When I use the following command lines to run on the same cluster, I get an error. command lines: ./ExaML-master/parser/parse-examl -s data/dna_rokasD1/dna_rokasD1.phy -q data/dna_rokasD1/dna_rokasD1.model -m DNA -n dna_rokasD1 ./ExaML-master/examl/examl-AVX -m GAMMA -n ex_dna_rokasD1_p1 -s data/dna_rokasD1/dna_rokasD1.phy -t data/dna_rokasD1/start_trees/start_p1 -w data/dna_rokasD1 error: the address data type has a size of 64 bits on the current system while on the system on which you created the binary alignment file using the parser the address size is -910573176 bits! Usually this indicates that the parser was executed on a 32-bit system while you are trying to run ExaML on a 64-bit system. Please parse the binary alignment file on the same hardware on which you intend to run ExaML. But I am using the same cluster. I do not know why this is so. Thanks in advance if you can help me. Kind regards, Cynthia — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#14>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AA1w-nAlIjsYC5xHlFKz0wHn05ZqpsRzks5vWM5FgaJpZM4bs11m>.

-- Alexandros (Alexis) Stamatakis Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology www.exelixis-lab.org