Cannot install development version

[sambrilleman]

Summary:

I'm trying to build the feature/survival branch from source, using "Install and Restart" in the RStudio console for the rstanarm.Rproj R project.

But after taking forever (some time overnight), it eventually fails, this time with this error in the build window:

E> C:/Rpackages/StanHeaders/include/stan/math/rev/mat/fun/quad_form.hpp:70:13: required from 'void stan::math::internal::quad_form_vari<Ta, Ra, Ca, Tb, Rb, Cb>::chainB(Eigen::Matrix<stan::math::var, Rb, Cb>&, const Eigen::Matrix<double, R, C>&, const Eigen::Matrix<double, Rb, Cb>&, const Eigen::Matrix<double, Cb, Cb>&) [with Ta = double; int Ra = -1; int Ca = -1; Tb = stan::math::var; int Rb = -1; int Cb = 1]
E> C:/Rpackages/StanHeaders/include/stan/math/rev/mat/fun/quad_form.hpp:79:5: required from 'void stan::math::internal::quad_form_vari<Ta, Ra, Ca, Tb, Rb, Cb>::chainAB(Eigen::Matrix<T, R, C>&, Eigen::Matrix<T2, R2, C2>&, const Eigen::Matrix<double, R, C>&, const Eigen::Matrix<double, Rb, Cb>&, const Eigen::Matrix<double, Cb, Cb>&) [with Ta = double; int Ra = -1; int Ca = -1; Tb = stan::math::var; int Rb = -1; int Cb = 1]
E> C:/Rpackages/StanHeaders/include/stan/math/rev/mat/fun/quad_form.hpp:92:5: required from 'void stan::math::internal::quad_form_vari<Ta, Ra, Ca, Tb, Rb, Cb>::chain() [with Ta = double; int Ra = -1; int Ca = -1; Tb = stan::math::var; int Rb = -1; int Cb = 1]
E> C:/Rpackages/StanHeaders/include/stan/math/rev/mat/fun/quad_form.hpp:89:16: required from here
E> C:/Rpackages/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8:warning: noring attributes on template argument 'Eigen::internal::packet_traits<double>::type{aka '__vector(2) double-Wignored-attributes
E> In file included from C:/Rpackages/StanHeaders/include/stan/math/rev/core.hpp:46
E>                  from C:/Rpackages/StanHeaders/include/stan/math/rev/mat.hpp:6
E>                  from C:/Rpackages/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4
E>                  from C:/Rpackages/StanHeaders/include/src/stan/model/test_gradients.hpp:7
E>                  from C:/Rpackages/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10
E>                  from C:/Rpackages/rstan/include/rstan/stan_fit.hpp:35
E>                  from C:/Rpackages/rstan/include/rstan/rstaninc.hpp:4
E>                  from stan_files/continuous.hpp:18
E>                  from stan_files/continuous.cc:3
E> C:/Rpackages/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:t global scope:
E> C:/Rpackages/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13:warning: void stan::math::set_zero_all_adjoints()ined but not used [-Wunused-function
E>  static void set_zero_all_adjoints
E>              ^~~~~~~~~~~~~~~~~~~~~
E> C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/as.exe: stan_files/continuous.o: too many sections (79359)
E> C:\Users\SBRILL~1\AppData\Local\Temp\ccKCIkOw.s: Assembler messages:
E> C:\Users\SBRILL~1\AppData\Local\Temp\ccKCIkOw.s: Fatal error: can't write 56 bytes to section .text of stan_files/continuous.o: 'file too big'
E> C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/as.exe: stan_files/continuous.o: too many sections (79359)
E> C:\Users\SBRILL~1\AppData\Local\Temp\ccKCIkOw.s: Fatal error: can't close stan_files/continuous.o: file too big
E> make: *** [C:/PROGRA~1/R/R-40~1.3/etc/x64/Makeconf:227: stan_files/continuous.o] Error 1
E> rm stan_files/continuous.cc stan_files/surv.cc
E> ERROR: compilation failed for package 'rstanarm'
E> * removing 'C:/Users/SBRILL~1/AppData/Local/Temp/RtmpoFuIY3/devtools_install_175069105387/rstanarm' 

Execution halted

Exited with status 1.

Reproducible Steps:

As described above.

RStanARM Version:

feature/survival branch.

R Version:

4.0.3

Operating System:

Windows 10

[jgabry]

E> C:\Users\SBRILL1\AppData\Local\Temp\ccKCIkOw.s: Assembler messages:
E> C:\Users\SBRILL1\AppData\Local\Temp\ccKCIkOw.s: Fatal error: can't write 56 bytes to section .text of stan_files/continuous.o: 'file too big'
E> C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/as.exe: stan_files/continuous.o: too many sections (79359)
E> C:\Users\SBRILL~1\AppData\Local\Temp\ccKCIkOw.s: Fatal error: can't close stan_files/continuous.o: file too big

Looks like it's not happy with some file sizes.

@bgoodri Any ideas?

[bgoodri]

Try R 4.1 I guess

…

On Mon, Jun 21, 2021 at 3:26 PM Jonah Gabry ***@***.***> wrote: E> C:\Users\SBRILL1\AppData\Local\Temp\ccKCIkOw.s: Assembler messages: E> C:\Users\SBRILL1\AppData\Local\Temp\ccKCIkOw.s: Fatal error: can't write 56 bytes to section .text of stan_files/continuous.o: 'file too big' E> C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/as.exe: stan_files/continuous.o: too many sections (79359) E> C:\Users\SBRILL~1\AppData\Local\Temp\ccKCIkOw.s: Fatal error: can't close stan_files/continuous.o: file too big Looks like it's not happy with some file sizes. @bgoodri <https://github.com/bgoodri> Any ideas? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#537 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAZ2XKSBIKR5EYOAGAEDQUTTT6G47ANCNFSM47ARJKLQ> .