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Implement collapse mode for bacterial annotation evaluation #76

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standage opened this issue Jun 28, 2019 · 0 comments · Fixed by #77
Closed

Implement collapse mode for bacterial annotation evaluation #76

standage opened this issue Jun 28, 2019 · 0 comments · Fixed by #77

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@standage
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It would be helpful for visualization purposes to collapse redundant gene predictions from different sources. If 3 ab initio gene predictors agree on a single gene model and 2 others agree on a different model, it would be better to print two glyphs instead of 5, with the supporting annotation sources printed above.
@standage standage mentioned this issue Jul 8, 2019
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standage added a commit that referenced this issue Jul 8, 2019
@standage
New collapse function and bcollapse method (#77)
197dedf 
This update introduces a `collapse_locus` function to the `bae` module, and a corresponding `tag bcollapse` command to the CLI. Given a stream of loci containing multiple sources of bacterial annotation, the new functionality will collapse redundant annotations and report only the unique gene models, along with the sources supporting each distinct gene model. Closes #76.
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New collapse function and bcollapse method standage/tag
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@standage