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New bae module #73

Merged
merged 6 commits into from
Jun 26, 2019
Merged

New bae module #73

merged 6 commits into from
Jun 26, 2019

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standage
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@standage standage commented Jun 26, 2019

This update introduces the bae module for bacterial annotation evaluation. Multiple sources of annotation are grouped into loci, and each locus is examined one-by-one to determine the level of agreement between the different sources of annotation.

  • Full test coverage? Any additional tests that could easily be added?
  • API documentation up-to-date? Docstring examples?
  • Is the CHANGELOG up-to-date?

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codecov-io commented Jun 26, 2019

Codecov Report

Merging #73 into master will not change coverage.
The diff coverage is 100%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master    #73     +/-   ##
=======================================
  Coverage     100%   100%             
=======================================
  Files          36     23     -13     
  Lines        2372   1281   -1091     
  Branches      343    287     -56     
=======================================
- Hits         2372   1281   -1091
Impacted Files Coverage Δ
tag/locus.py 100% <ø> (ø) ⬆️
tag/cli/bae.py 100% <100%> (ø)
tag/feature.py 100% <100%> (ø) ⬆️
tag/bae.py 100% <100%> (ø)
tag/range.py 100% <100%> (ø) ⬆️
tag/__init__.py 100% <100%> (ø) ⬆️
tag/cli/__init__.py 100% <100%> (ø) ⬆️
tag/tests/test_reader.py
tag/tests/test_utils.py
tag/tests/test_cli.py
... and 12 more

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@standage standage merged commit 4bd6e2d into master Jun 26, 2019
@standage standage deleted the bae branch June 26, 2019 19:44
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2 participants