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  • Sequencing Core Facility, National Institute for Communicable Diseases
  • Johannesburg, South Africa

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Pinned

  1. Calculate-Haplotype-Frequencies Calculate-Haplotype-Frequencies Public

    This script calculates allelic and genotypic frequencies, as well as perform Fisher's Exact Test to compare representation of genotypes and alleles in different sample groups

    R 2

  2. Extract-haplotype-sequences Extract-haplotype-sequences Public

    Java

  3. jekesa jekesa Public

    Jekesa (Illuminate) is an automated bash pipeline for bacterial whole genome assembly and typing using Illumina paired-end sequencing data.

    Python 5 4

  4. lncRNA-analysis lncRNA-analysis Public

    Shell

  5. miRNA-analysis miRNA-analysis Public

    Pipeline for miRNA profiling, including read mapping, multi-mapped read correction and read counting

    Shell 1

  6. h3abionet/h3ameta h3abionet/h3ameta Public

    H3ABioNet Metagenomics Workflow

    HTML 4 5