title	author	date	output
README	stanislav zamecnik	15 3 2021	html_document pdf_document default default

OEFPIL

Optimal Estimation of Parameters by Iterated Linearization

The original version of this software was written in R by Stanislav Zamecnik, Zdenka Gerslova and Vojtech Sindlar in year 2021. The package is based on theoretical background of work of prof. Gejza Wimmer and afterwards implemented by mentioned authors. Main features of package include:

• estimation of parameters of nonlinear function by iterated linearization
• possibility to use generic functions to OEFPIL objects
  • extract confidence bands for set of points
  • confidence intervals for parameters
  • extract summary of used model
  • get covariance matrix for model parameters.
• plot the OEFPIL object, when one is created in a different ways
  • plot of estimated curve
  • plot of estimated curve with ggplot2 package
• count orthogonal residuals for OEFPIL object
• print out information about OEFPIL object
• calculate estimates of parameters in Nanoindentation
• two datasets were added to the package to show functionality

Installation

You can install release from Github repository by:

devtools::install_github("stazam/OEFPIL-")

or you install this release from CRAN with:

install.packages("OEFPIL")

Usage

In R session do:

library(MASS)
steamdata <- steam
colnames(steamdata) <- c("x","y")
k <- nrow(steamdata)
CM <- diag(rep(10,2*k))

Creating OEFPIL object which we want to work with

library(OEFPIL)
st1 <- OEFPIL(steamdata, y ~ b1 * 10 ^ (b2 * x/ (b3 + x)),
list(b1 = 5, b2 = 8, b3 = 200), CM, useNLS = FALSE)

Displaying results using summary function

summary(st1)

## Summary of the result:  
##  
## y ~ b1 * 10^(b2 * x/(b3 + x))
## 
##     Param Est         Std Dev   CI Bound 2.5 %   CI Bound 97.5 %
## b1   4.487870        1.526903         1.495196          7.480545
## b2   7.188155        1.865953         3.530953         10.845356
## b3 221.837783       99.953658        25.932214        417.743352
## 
##  Estimated covariance matrix: 
##            b1         b2        b3
## b1   2.331432   2.296195  134.3054
## b2   2.296195   3.481782  184.6313
## b3 134.305405 184.631318 9990.7337
## 
##  Number of iterations: 10

Plot of estimated function

plot(st1, signif.level = 0.05, interval = "conf", main  = "Estimated function by iterated linearization")

Ggplot graph of estimated function

library(ggplot2)
curvplot.OEFPIL(st1, signif.level = 0.05)

For more information and examples see:

?OEFPIL

This software OEFPIL was financed by the Technology Agency of the Czech Republic within the ZETA Programme. https://www.tacr.cz .