R version 4.1.1 NetCoMi not installing

[CarlaCristinaUranga]

Hi, is anyone else having trouble downloading NetCoMi after updating to R 4.1.1?

Best,
Carla

[Xinming9606]

I have similar problem on installing, it say
E> ERROR: dependencies 'SpiecEasi', 'SPRING' are not available for package 'NetCoMi'
But pacakge SpiecEasi and SPRING were not installed, I'm not sure if it's the problem of updated R version. But please share if you solve the problem!

[stefpeschel]

Hi,
I just updated my R version to 4.1.1 and installed NetCoMi into the empty library, which worked without any issues. Only devtools and BiocManager must have been previously installed. Here's the code:

install.packages("devtools")
install.packages("BiocManager")

devtools::install_github("stefpeschel/NetCoMi", dependencies = TRUE,
repos = c("https://cloud.r-project.org/",
BiocManager::repositories()))

Dependencies that are only available on GitHub (such as SpiecEasi and SPRING) do sometimes cause problems so that they can't be installed automatically. If you encounter an error message regarding SpiecEasi or SPRING, I would recommend intalling them manually:

devtools::install_github("GraceYoon/SPRING")
devtools::install_github("zdk123/SpiecEasi")

Please let me know if there are still problems with the installation process.

Best,
Stefanie

[Xinming9606]

Hi Stefanie,

I installed it successfully! Thanks for your reply!

[CarlaCristinaUranga]

I was also able to install it previously by installing each dependency individually. Thanks for an AWESOME package. Best wishes, Carla

…

On Thu, Oct 28, 2021, 12:15 AM Stefanie Peschel ***@***.***> wrote: Hi, I just updated my R version to 4.1.1 and installed NetCoMi into the empty library, which worked without any issues. Only devtools and BiocManager must have been previously installed. Here's the code: install.packages("devtools") install.packages("BiocManager") devtools::install_github("stefpeschel/NetCoMi", dependencies = TRUE, repos = c("https://cloud.r-project.org/", BiocManager::repositories())) Dependencies that are only available on GitHub (such as SpiecEasi and SPRING) do sometimes cause problems so that they can't be installed automatically. If you encounter an error message regarding SpiecEasi or SPRING, I would recommend intalling them manually: devtools::install_github("GraceYoon/SPRING") devtools::install_github("zdk123/SpiecEasi") Please let me know if there are still problems with the installation process. Best, Stefanie — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#27 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AFK6HC6DRJ35BWI6QEJRAW3UJEBCTANCNFSM5DTHL6EA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.