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Long-range regions of high LD #14

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xiangzhu opened this issue Aug 12, 2018 · 0 comments
Open

Long-range regions of high LD #14

xiangzhu opened this issue Aug 12, 2018 · 0 comments
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data file enhancement

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@xiangzhu
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It may be useful to include the list of long-range LD regions in LDshrink: https://genome.sph.umich.edu/wiki/Regions_of_high_linkage_disequilibrium_(LD).

The data structure is straightforward, 3-column data frame:

Chr Start Stop
1 48000000 52000000
2 86000000 100500000
2 134500000 138000000
2 183000000 190000000

For example, let LDshrink throw a warning message when genotypes of SNPs in these long-range LD regions are used.
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