refactor: convert pytest to a matrix job #7
Workflow file for this run
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| name: pytest-workflow test | |
| on: [push] | |
| jobs: | |
| pytest_check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| lfs: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Install miniwdl and pytest-workflow | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-dev.txt | |
| - name: Run test | |
| run: | | |
| miniwdl run --debug -d test-output/. --task calc_gene_lengths tools/util.wdl gtf="tests/tools/input/genes.gtf.gz" |