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  1. MALDIvs16S MALDIvs16S Public

    Whole-cell MALDI-TOF MS versus 16S rRNA gene analysis in dereplication and identification of recurrent bacterial isolates

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  2. cleanSeqTools cleanSeqTools Public

    Convenience functions for microbiome data pre-processing.

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    Downloads NCBI assemblies from RefSeq or GenBank based on GTDB taxonomy labels.

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  4. FBdenovo FBdenovo Public

    de novo mode for FrameBot (frame shift correction tool)

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    R convenience functions for processing MS MALDI-TOF spectra of microbes

  6. Pseudomonas_veronii_Pvy Pseudomonas_veronii_Pvy Public

    Complementary code for manuscript Genomic analysis of dibenzofuran-degrading Pseudomonas veronii strain Pvy reveals its biodegradative versatility.

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