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16 Open 1,127 Closed
16 Open 1,127 Closed
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Issues list

rror in LinkPeaks bug Something isn't working
#1698 opened May 9, 2024 by shabs24
Footprinting issue bug Something isn't working
#1689 opened Apr 23, 2024 by leecon30
AddChromatinModule function creates NA values in some cells documentation Documentation help
#1680 opened Apr 8, 2024 by Ryuichi30
Check for MACS2 before splitting file enhancement New feature or request
#1678 opened Apr 5, 2024 by AmelZulji
3
TSS enrichment with a region extension 2000bp
#1638 opened Feb 26, 2024 by Montsecb
Solution for errors related to as_cholmod_sparse or CRsparse_rowSums
#1596 opened Jan 18, 2024 by timoast
2
BPcells doesn't work with chromatin Assay enhancement New feature or request
#1507 opened Oct 10, 2023 by LucaTucciarone
4
ReadMGATK does not work if using -eb option in mgatk bug Something isn't working
#1462 opened Jul 31, 2023 by msteph11
1
Changing Fragment object annotation style enhancement New feature or request
#1370 opened Apr 4, 2023 by daccachejoe
1
FeatureMatrix() should count cut sites? enhancement New feature or request
#1369 opened Apr 4, 2023 by nesetozel
2
Error adding gene names to the differentially accessible peaks enhancement New feature or request
#1337 opened Feb 14, 2023 by KshitijDeoghar
2
signac can consider adding a function similar to plotPeak2GeneHeatmap in ArchR enhancement New feature or request
#1227 opened Sep 27, 2022 by shijianasdf
Add MACS3 support in PeakCalling enhancement New feature or request
#1085 opened Apr 20, 2022 by ghost
2
MACS2 peaks beyond chromosome enhancement New feature or request
#1050 opened Mar 17, 2022 by t-and
5
Compute log fold change with linear model enhancement New feature or request
#1035 opened Mar 10, 2022 by danielcgingerich
6
Enhanced CoveragePlot() options enhancement New feature or request
#362 opened Dec 10, 2020 by zrcjessica
3
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