Thresholding method change does not alter applied threshold.

[ScienceToolkit]

The thresholding method selection on the settings dialog does not alter the method used in analysis as expected. This issue was found while processing a 2D image and has been reproduced on a 3D stack as well.

Potential Fix:
Separate the method selection from the binarization step. Need to dig up the documentation on this command to see why this is.
From:

run("Make Binary", "method=" + THRESHOLD_METHOD + " background=Dark");

To:

setAutoThreshold(THRESHOLD_METHOD)
run("Make Binary", " background=Dark");