This repository contains discussion, analysis pipelines, files and scripts used in the preprint "Cross-shore distribution of SAR11 suggests efficient removal by a hard-bottom subtidal community "
Throughout this documentation the names in the final publication are diffeent than those used in the analysis. Rather than exchange all names we provide the correspondence between names that are:
Since we do not keep the original paths in this distribution we add links to files necessary to reproduce our analysis whenever needed
We used different conda enviroments containing different packages so we will list the content of these environments. We also provide the system profile at some of the steps of the analysis
- Pipeline Script Script used for the data analysis
- Taxonomy Identification Database Construction of database used for ASV identification based on the silva_132_99.fna release from Silva
- SRA submission
- Final classifier Qiime artifact
- Mapping file
- ASV table biom and txt format
- Representative sequences