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@sysbiomics

Systems Biology at WV lab

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  1. aspergillus_model aspergillus_model Public

    Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae

    MATLAB 2

  2. Cordyceps_militaris-GEM Cordyceps_militaris-GEM Public

    Genome-scale metabolic model of Cordyceps militaris

    MATLAB 1 1

  3. meta-gene meta-gene Public

    The meta‐gene catalogue of Thai gut microbiome

  4. Limosilactobacillus_reuteri_KUB_AC5-GSMM Limosilactobacillus_reuteri_KUB_AC5-GSMM Public

    A high quality genome-scale metabolic model of probiotic L. reuteri KUB-AC5

    MATLAB

  5. Cordyceps_militaris-GSMM Cordyceps_militaris-GSMM Public

    The enhanced genome-scale metabolic model of Cordyceps militaris, iPC1469 through metabolic footprint and transcriptome profiles

    MATLAB

  6. minbreeze minbreeze Public

    16s metabolic pipeline written in nextflow.

    R

Repositories

Showing 10 of 12 repositories
  • libmiome Public

    Secondary pipeline

    sysbiomics/libmiome’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Aug 13, 2024
  • Cordyceps_militaris-tiGSMM Public
    sysbiomics/Cordyceps_militaris-tiGSMM’s past year of commit activity
    MATLAB 0 0 0 0 Updated Feb 1, 2024
  • itsbreeze Public

    ITS analysis pipeline written in nextflow

    sysbiomics/itsbreeze’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 29, 2023
  • minbreeze Public

    16s metabolic pipeline written in nextflow.

    sysbiomics/minbreeze’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 29, 2023
  • sysbiome-dash Public
    sysbiomics/sysbiome-dash’s past year of commit activity
    R 0 BSD-2-Clause 0 0 0 Updated Jun 29, 2023
  • sysbiome-tower Public
    sysbiomics/sysbiome-tower’s past year of commit activity
    Go 0 0 0 0 Updated Feb 13, 2023
  • SYSMIOME Public

    SYSMIOME digital platform.

    sysbiomics/SYSMIOME’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 11, 2023
  • meta-gene Public

    The meta‐gene catalogue of Thai gut microbiome

    sysbiomics/meta-gene’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 9, 2022
  • Cordyceps_militaris-GSMM Public

    The enhanced genome-scale metabolic model of Cordyceps militaris, iPC1469 through metabolic footprint and transcriptome profiles

    sysbiomics/Cordyceps_militaris-GSMM’s past year of commit activity
    MATLAB 0 CC-BY-4.0 0 1 0 Updated Jul 12, 2022
  • Limosilactobacillus_reuteri_KUB_AC5-GSMM Public

    A high quality genome-scale metabolic model of probiotic L. reuteri KUB-AC5

    sysbiomics/Limosilactobacillus_reuteri_KUB_AC5-GSMM’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated Feb 7, 2022
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