refactor/prepyrus v3

[Firgrep]

• chore: preparing plan
• refactor: split out code to new mods
• refactor: validation mod done, started refactor process to receive structs
• refactor: split remaining code into utils and inserter files
• fix: falsely injecting empty bib html
• feat: add total count for processing
• chore: print msg
• chore: tidying prints

PR Author's Note

• Refactored prepyrus from a single file into multiple files and modules for better readability and maintenance
• Added some nicer prints and more information upon process completion

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