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KINCv3 can't import file #35

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spficklin opened this issue Mar 20, 2018 · 1 comment
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KINCv3 can't import file #35

spficklin opened this issue Mar 20, 2018 · 1 comment

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@spficklin
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spficklin commented Mar 20, 2018

When I run this command on Kamiak:

kinc-cli run import_emx --input Yest-ematrix.txt --output Yeast.emx --nan NA

I'm getting MPI errors:

 --------------------------------------------------------------------------
 It looks like MPI_INIT failed for some reason; your parallel process is
 likely to abort.  There are many reasons that a parallel process can
 fail during MPI_INIT; some of which are due to configuration or environment
 problems.  This failure appears to be an internal failure; here's some
 additional information (which may only be relevant to an Open MPI
 developer):
 
   ompi_mpi_init: ompi_rte_init failed
   --> Returned "(null)" (14) instead of "Success" (0)
 --------------------------------------------------------------------------
 *** An error occurred in MPI_Init
 *** on a NULL communicator
 *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
 ***    and potentially your MPI job)

I'm using openmpi 1.10.1

@spficklin
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spficklin commented Mar 20, 2018

Nevermind, it was a Kamiak submission issue. I have it worked out.

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