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szczurek-lab

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  1. hydramp hydramp Public

    HydrAMP: a deep generative model for antimicrobial peptide discovery

    Jupyter Notebook 37 9

  2. Celloscope Celloscope Public

    Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

    Jupyter Notebook 5 1

  3. jointformer jointformer Public

    Python 5

  4. SIEVE SIEVE Public

    Joint inference of single-nucleotide variants and cell phylogeny from scDNA-seq.

    Java 4 1

  5. DataFilter DataFilter Public

    Selecting candidate single-nucleotide variant sites with read counts for SIEVE.

    C++ 3 1

  6. SIEVE_benchmark_pipeline SIEVE_benchmark_pipeline Public

    Benchmarking framework for SIEVE.

    Python 3

Repositories

Showing 10 of 21 repositories
  • szczurek-lab/jointformer’s past year of commit activity
    Python 5 MIT 0 14 2 Updated Nov 8, 2024
  • ST-Assign Public

    ST-Assign

    szczurek-lab/ST-Assign’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Nov 1, 2024
  • RetMol Public Forked from NVlabs/RetMol

    A new retrieval-based framework for controllable molecule generation.

    szczurek-lab/RetMol’s past year of commit activity
    Python 0 4 0 0 Updated Sep 30, 2024
  • CaClust Public
    szczurek-lab/CaClust’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Sep 30, 2024
  • hydramp Public

    HydrAMP: a deep generative model for antimicrobial peptide discovery

    szczurek-lab/hydramp’s past year of commit activity
    Jupyter Notebook 37 MIT 9 2 0 Updated Sep 21, 2024
  • SIEVE Public

    Joint inference of single-nucleotide variants and cell phylogeny from scDNA-seq.

    szczurek-lab/SIEVE’s past year of commit activity
    Java 4 GPL-3.0 1 1 0 Updated Jun 9, 2024
  • DataFilter Public

    Selecting candidate single-nucleotide variant sites with read counts for SIEVE.

    szczurek-lab/DataFilter’s past year of commit activity
    C++ 3 GPL-3.0 1 0 0 Updated Jun 8, 2024
  • szczurek-lab/Tumoroscope’s past year of commit activity
    HTML 3 GPL-3.0 0 0 0 Updated Jan 30, 2024
  • condot Public Forked from bunnech/condot

    Supervised Training of Conditional Monge Maps

    szczurek-lab/condot’s past year of commit activity
    Jupyter Notebook 0 MIT 4 0 0 Updated Oct 30, 2023
  • Celloscope Public

    Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

    szczurek-lab/Celloscope’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 1 0 Updated Sep 13, 2023

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