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25 Open 127 Closed
25 Open 127 Closed
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Issues list

High background mutation of CtoT GtoA mutations
#164 opened Nov 8, 2024 by Error-fre
summary - PCA done for group of samples not for samples, time points
#163 opened Oct 22, 2024 by mmaslon
alleyoop uttrates error
#161 opened Aug 27, 2024 by mmaslon
11
slamdunk all: No tcount files and no error
#160 opened Aug 15, 2024 by andtsouris
3
Application to Amplicon-Seq Libraries
#159 opened Jul 17, 2024 by Rinyaveion
1
Proposal for a new Alleyoop: convenient summary of dump output
#153 opened Apr 29, 2024 by isaacvock
1
4SU labeled mRNA library built using the total RNAseq
#148 opened Apr 18, 2024 by bioinformatica
7
KeyError: "tag 'XI' not present". what does identity value mean?
#136 opened Oct 27, 2023 by zhouyjjj
4
Samplesheet (see Sample file format ) or a list of all sample BAM/FASTA(gz)/FASTQ(gz) files (wildcard * accepted).
#134 opened Aug 19, 2023 by Umair1441
15
DESeq2 for SLAM-seq
#126 opened Mar 17, 2023 by gdolsten
7
Dockerfile bugged
#124 opened Feb 14, 2023 by mattheatley
1
3'UTR length
#121 opened Dec 27, 2022 by Choopanian-Peyman
4
alleyoop utrrates output file extension
#111 opened Feb 8, 2022 by jvanbelzen
XA tag used to estimate read length
#40 opened Oct 26, 2018 by t-neumann
Invalid quality values in bam file when run with fasta. bug
#30 opened Jun 7, 2018 by fabou-uobaf
@philres
4
run dependency - count files recalculated unnecessarily? enhancement
#26 opened May 17, 2018 by ChiWPak
1
Configurable tcperutrpos static window size enhancement
#22 opened Jan 18, 2018 by t-neumann
Dash in bed file splitting bug
#20 opened Nov 13, 2017 by t-neumann
SNP Info flag discrepancy bug
#19 opened Oct 3, 2017 by t-neumann
NGM multimapper ordering bug
#18 opened Oct 3, 2017 by t-neumann
@philres
Check if chromosome names match bam/bed bug
#15 opened May 16, 2017 by t-neumann
6
Reverse stranded support enhancement
#14 opened May 16, 2017 by t-neumann
3
Filterbed does not activate multimapper reporting enhancement
#13 opened May 12, 2017 by t-neumann
Faulty bed parser bug
#11 opened Mar 29, 2017 by t-neumann
Unknown behaviour read > max read length bug
#10 opened Mar 29, 2017 by t-neumann
2
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