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umxGxE: parameter table; SE ribbon on plots; user-settable mod range #96

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tbates opened this issue Jul 26, 2019 · 4 comments
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graphics/UI plot, tables, summary etc. top5 marked as an active goal: close before working on other issues
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@tbates
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tbates commented Jul 26, 2019

umxGxE

  • Add parameter table print out
  • SE ribbon to GxE plots
  • User able to choose range of moderator values to plot (currently the set of unique actual values are plotted)
@tbates tbates added top5 marked as an active goal: close before working on other issues graphics/UI plot, tables, summary etc. labels Jul 26, 2019
@tbates tbates added this to the Boulder 2020 milestone Jul 26, 2019
@tbates tbates self-assigned this Jul 26, 2019
@tbates
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tbates commented Jul 26, 2019

closing point 1: a table of parameters

require(umx); data(twinData)
twinData$age1 = twinData$age2 = twinData$age
mzData  = subset(twinData, zygosity == "MZFF")
dzData  = subset(twinData, zygosity == "DZFF")
m1 = umxGxE(selDVs = "bmi", selDefs = "age", dzData = dzData, mzData = mzData, sep= "", try="yes")
selDVs: 'bmi1' and 'bmi2'
1 dz rows dropped due to missing def var for Twin 1 or Twin 2 or both
Running G_by_E with 9 parameters
name Estimate Std.Error
a_r1c1 0.713 0.042
c_r1c1 0.000 0.300
e_r1c1 0.292 0.030
am_r1c1 0.002 0.001
cm_r1c1 0.000 0.007
em_r1c1 0.006 0.001
mean 20.590 0.134
lin11 0.038 0.007
quad11 0.000 0.000

@tbates tbates mentioned this issue Oct 6, 2020
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@tbates
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tbates commented Oct 8, 2020

version 4.2.0 adds CI ribbons

Thanks to #139 the user can now also customise the output:

tmp[[2]]+ylim(c(0,1.5))

Rplot

@mcneale
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mcneale commented Oct 8, 2020

Yesssss. Great stuff!

@tbates tbates closed this as completed in 76f3ae9 Oct 8, 2020
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tbates commented Oct 8, 2020

custom moderator range

Rplot

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