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Connection rule #2

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Commits on Jun 4, 2015

  1. removed main blocks

    Tom Close committed Jun 4, 2015
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  2. tracking down stray "ComponentClass" references

    Tom Close committed Jun 4, 2015
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  3. renamed 'componentclass' to 'component_class' to match naming 

    conventions for other variables
    Tom Close committed Jun 4, 2015
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  4. removed user layer Dynamics, ConnectionRule, RandomDistribution

    Tom Close committed Jun 4, 2015
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  5. renamed *Class to * (e.g. DynamicsClass to Dynamics)

    Tom Close committed Jun 4, 2015
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  6. added xml to gitignore within sample_components directory

    Tom Close committed Jun 4, 2015
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  7. cleaned up missing references to DynamicsClass

    Tom Close committed Jun 4, 2015
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  8. updated iaf example with correct dimensions

    Tom Close committed Jun 4, 2015
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  9. fixed bugs with renaming source and destination to pre and post

    Tom Close committed Jun 4, 2015
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  10. starting to refactor port connections

    Tom Close committed Jun 4, 2015
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  11. refactored projection syntax to match version 2 syntax

    Tom Close committed Jun 4, 2015
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  12. debugging projection refactor

    Tom Close committed Jun 4, 2015
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  13. Unit-tests pass after refactoring of projection syntax

    Tom Close committed Jun 4, 2015
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  14. fixed typo in ComponentRequiredDefinitions method declaration

    Tom Close committed Jun 4, 2015
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  15. added num_* properties to container objects to determine the number of 

    elements in the container
    Tom Close committed Jun 4, 2015
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  16. added more convenience methods for accessing members of containers

    Tom Close committed Jun 4, 2015
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  17. added *Properties objects

    Tom Close committed Jun 4, 2015
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  18. cleaned up normalise_parameter_as_list so that it can handle generators

    Tom Close committed Jun 4, 2015
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  19. removed old write method from Component and added check for dictionaries 

    when normalising iterable parameters to classes
    Tom Close committed Jun 4, 2015
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  20. added conversion of abs->fabs when writing c strings

    Tom Close committed Jun 4, 2015
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  21. cleaned bugs so that unit-tests work

    Tom Close committed Jun 4, 2015
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  22. added strip when writing to xml to remove c code not supported

    Tom Close committed Jun 4, 2015
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  23. Renamed Component to DynamicsProperties

    Tom Close committed Jun 4, 2015
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  24. changed directory structure of visitors and validators

    Tom Close committed Jun 4, 2015
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  25. restructured validators directories

    Tom Close committed Jun 4, 2015
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  26. updated import paths

    Tom Close committed Jun 4, 2015
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  27. removing redundant visitors

    Tom Close committed Jun 4, 2015
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  28. remove more redundant code

    Tom Close committed Jun 4, 2015
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  29. more refactoring of visitors

    Tom Close committed Jun 4, 2015
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  30. added all_expressions properties to all component classes

    Tom Close committed Jun 4, 2015
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  31. added unit test (and debugged) all_expressions

    Tom Close committed Jun 4, 2015
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  32. converted constant and reference to use attributes instead of body

    Tom Close committed Jun 4, 2015
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  33. added symbol property to ExpressionSymbol class

    Tom Close committed Jun 4, 2015
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  34. added luminous intensity dimension and made sympy symbols real valued

    Tom Close committed Jun 4, 2015
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  35. made "name" an attribute of Definition and Reference (in example xml 

    code)
    Tom Close committed Jun 4, 2015
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  36. deleted old test directory

    Tom Close committed Jun 4, 2015
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  37. fixed errors introduced by refactoring of reference and constants to use 

    attributes over body text
    Tom Close committed Jun 4, 2015
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  38. added comment

    Tom Close committed Jun 4, 2015
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  39. added subs method to Expressions and allowed elements passed to index_of 

    with a specific key to be not part of the component class
    Tom Close committed Jun 4, 2015
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  40. renamed validator.namingconflicts to just validator.names

    Tom Close committed Jun 4, 2015
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Commits on Jun 11, 2015

  1. added exception handling for missing XML attributes

    Tom Close committed Jun 11, 2015
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  2. added in bug-fixes with dimensionality validator from piecewise branch

    Tom Close committed Jun 11, 2015
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  3. fixed up test xml documents so they provide regime names and dimensions

    Tom Close committed Jun 11, 2015
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  4. fixes to expression parser and dimension checker

    Tom Close committed Jun 11, 2015
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  5. added random variables to transitions

    Tom Close committed Jun 11, 2015
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  6. added check for valid random distribution names

    Tom Close committed Jun 11, 2015
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  7. added selection rule elements

    Tom Close committed Jun 11, 2015
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  8. renamed levels attribute to 'stages'

    Tom Close committed Jun 11, 2015
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  9. implementing visitors for connection rule syntax

    Tom Close committed Jun 11, 2015
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  10. Expanded XML Reader, and Writer

    @RussellJarvis
    RussellJarvis authored and Tom Close committed Jun 11, 2015
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  11. started implementing connection rule xml reader/writer

    @RussellJarvis
    RussellJarvis authored and Tom Close committed Jun 11, 2015
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  12. updated syntax of connection rule

    Tom Close committed Jun 11, 2015
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Commits on Jun 20, 2015

  1. Committed everything.

    @RussellJarvis
    RussellJarvis committed Jun 20, 2015
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Commits on Jun 25, 2015

  1. Made some progress with testing connection rule.

    @RussellJarvis
    RussellJarvis committed Jun 25, 2015
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Commits on Jun 26, 2015

  1. Created the begining of a meaningful connectionrule test, for the tar… 

    …get model of the cerebellar cortex.
    @RussellJarvis
    RussellJarvis committed Jun 26, 2015
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