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DwC Mapping - MIXS:0000011 collection_date #17

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tucotuco opened this issue Feb 10, 2021 · 5 comments
Closed

DwC Mapping - MIXS:0000011 collection_date #17

tucotuco opened this issue Feb 10, 2021 · 5 comments
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DwC Mapping The issue is about the mapping of a MIxS term to a Darwin Core term or terms. DwC-MIxS TG This issue is related to the work of the Sustainable DarwinCore MIxS Interoperability Task Group

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@tucotuco
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tucotuco commented Feb 10, 2021

Field Value
subject_id http://rs.tdwg.org/dwc/terms/eventDate
subject_definition The date-time or interval during which an Event occurred. For occurrences, this is the date-time when the event was recorded. Not suitable for a time in a geological context.
subject_usage_notes Recommended best practice is to use a date that conforms to ISO 8601-1:2019.
subject_examples 1963-03-08T14:07-0600 (8 Mar 1963 at 2:07pm in the time zone six hours earlier than UTC). 2009-02-20T08:40Z (20 February 2009 8:40am UTC). 2018-08-29T15:19 (3:19pm local time on 29 August 2018). 1809-02-12 (some time during 12 February 1809). 1906-06 (some time in June 1906). 1971 (some time in the year 1971). 2007-03-01T13:00:00Z/2008-05-11T15:30:00Z (some time during the interval between 1 March 2007 1pm UTC and 11 May 2008 3:30pm UTC). 1900/1909 (some time during the interval between the beginning of the year 1900 and the end of the year 1909). 2007-11-13/15 (some time in the interval between 13 November 2007 and 15 November 2007).
predicate_id skos:narrowMatch
object_id MIXS:0000011
object_label collection_date
object definition The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx
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@tucotuco tucotuco added the DwC Mapping The issue is about the mapping of a MIxS term to a Darwin Core term or terms. label Feb 10, 2021
@pbuttigieg pbuttigieg added the DwC-MIxS TG This issue is related to the work of the Sustainable DarwinCore MIxS Interoperability Task Group label Mar 2, 2021
@raissameyer
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Suggested syntax predicate for the mapping above #17 (comment)

Field Value
subject_id http://rs.tdwg.org/dwc/terms/eventDate
subject_value_syntax - expected_value - unit {timestamp} - date and time
syntax_predicate_id skos:exactMatch
object_id MIXS:0000011
object_value_syntax - expected_value - unit {timestamp} - date and time
syntax_comment DwC requests compliance with ISO 8601-1:2019, so does MIxS

@pbuttigieg
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I think event date would be a narrowMatch to collection date, as events are semantically broader than sampling events (e.g. they could include observations too)

@raissameyer
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I think event date would be a narrowMatch to collection date, as events are semantically broader than sampling events (e.g. they could include observations too)

Thanks @pbuttigieg - I've updated our SSSOM matrix accordingly.

@tucotuco would you mind updating the mapping comment above to reflect that as well?

@tucotuco
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tucotuco commented May 13, 2021 via email

@tucotuco
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In discussion in the MIxS meeting 2021-05-26, the other types of Events than might be tracked were brought up, in which case a collecting event (and its date) would not be the only kind, thus a narrowMatch is an appropriate semantic relation. Table in the first comment updated.

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Labels
DwC Mapping The issue is about the mapping of a MIxS term to a Darwin Core term or terms. DwC-MIxS TG This issue is related to the work of the Sustainable DarwinCore MIxS Interoperability Task Group
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