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environment.yml
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name: myenv.3
channels:
- r
- anaconda
- ostrokach
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.0=anacondar_1
- aioeasywebdav=2.4.0=py36_1000
- aiohttp=3.6.2=py36h7b6447c_0
- appdirs=1.4.3=py36h28b3542_0
- asn1crypto=1.2.0=py36_0
- async-timeout=3.0.1=py36_0
- attrs=19.3.0=py_0
- bcrypt=3.1.7=py36h7b6447c_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_8
- bioconductor-biocgenerics=0.30.0=r36_1
- bioconductor-biostrings=2.52.0=r36h516909a_1
- bioconductor-iranges=2.18.2=r36h516909a_0
- bioconductor-s4vectors=0.22.0=r36h516909a_1
- bioconductor-xvector=0.24.0=r36h516909a_1
- bioconductor-zlibbioc=1.30.0=r36h516909a_1
- blas=1.0=mkl
- bwidget=1.9.11=1
- bz2file=0.98=py36_1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2019.11.28=hecc5488_0
- cairo=1.14.12=h8948797_3
- certifi=2019.11.28=py36_0
- cffi=1.13.2=py36h2e261b9_0
- chardet=3.0.4=py36_1003
- cryptography=2.8=py36h1ba5d50_0
- curl=7.65.3=hbc83047_0
- cutadapt=2.6=py36h516909a_0
- cyrus-sasl=2.1.26=h82bf5a1_4
- dbus=1.13.12=h746ee38_0
- decorator=4.4.0=py36_1
- dnaio=0.3=py36h14c3975_1
- docutils=0.15.2=py36_0
- dropbox=5.2.1=py36_0
- ecdsa=0.13=py36_1
- emboss=6.6.0=h6debe1e_0
- expat=2.2.6=he6710b0_0
- fasttree=2.1.10=h14c3975_3
- filechunkio=1.6=py36_0
- font-ttf-dejavu-sans-mono=2.37=h6964260_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=h7457263_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.13.0=h9420a91_0
- fonts-anaconda=1=h8fa9717_0
- freetype=2.9.1=h8a8886c_1
- fribidi=1.0.5=h7b6447c_0
- ftputil=3.2=py36_0
- gblocks=0.91b=1
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_8
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_8
- giflib=5.1.4=h14c3975_1
- glib=2.56.2=hd408876_0
- gmp=6.1.2=h6c8ec71_1
- graphite2=1.3.13=h23475e2_0
- gsl=2.4=h14c3975_4
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_8
- gzip=1.7=1
- harfbuzz=1.8.8=hffaf4a1_0
- hmmer=3.2.1=he1b5a44_2
- icu=58.2=h9c2bf20_1
- idna=2.8=py36_0
- idna_ssl=1.1.0=py36_0
- intel-openmp=2019.4=243
- itsx=1.1b=2
- java-jdk=7.0.91=1
- jpeg=9b=h024ee3a_2
- krb5=1.16.1=h173b8e3_7
- libcurl=7.65.3=h20c2e04_0
- libdb=6.1.26=0
- libedit=3.1.20181209=hc058e9b_0
- libffi=3.2.1=hd88cf55_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgd=2.2.5=hceca4fd_3
- libgfortran-ng=7.3.0=hdf63c60_0
- libntlm=1.5=h7b6447c_0
- libpng=1.6.37=hbc83047_0
- libsodium=1.0.16=h1bed415_0
- libssh2=1.8.2=h1ba5d50_0
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.0.10=h2733197_2
- libuuid=1.0.3=h1bed415_2
- libwebp=1.0.1=h8e7db2f_0
- libxcb=1.13=h1bed415_1
- libxml2=2.9.9=hea5a465_1
- mafft=7.455=h516909a_0
- make=4.2.1=h1bed415_1
- mkl=2019.4=243
- mkl-service=2.3.0=py36he904b0f_0
- mkl_fft=1.0.15=py36ha843d7b_0
- mkl_random=1.1.0=py36hd6b4f25_0
- multidict=4.5.2=py36h7b6447c_0
- ncurses=6.1=he6710b0_1
- numpy=1.17.4=py36hc1035e2_0
- numpy-base=1.17.4=py36hde5b4d6_0
- openjdk=8.0.152=h46b5887_1
- openssl=1.1.1d=h7b6447c_3
- pandas=0.25.3=py36he6710b0_0
- pandoc=2.2.3.2=0
- pango=1.42.4=h049681c_0
- parallel=20190722=0
- paramiko=1.18.4=py36h0d01e40_0
- pcre=8.43=he6710b0_0
- perl=5.26.2=h14c3975_0
- perl-app-cpanminus=1.7044=pl526_1
- perl-base=2.23=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-exporter=5.72=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-libwww-perl=6.39=pl526_0
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-lwp-simple=6.15=pl526h470a237_4
- perl-mime-base64=3.15=pl526_1
- perl-mozilla-ca=20180117=pl526_1
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-parent=0.236=pl526_1
- perl-socket=2.027=pl526_1
- perl-statistics-lite=3.62=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xsloader=0.24=pl526_0
- pigz=2.4=h84994c4_0
- pip=19.3.1=py36_0
- pixman=0.38.0=h7b6447c_0
- psutil=5.6.7=py36h7b6447c_0
- pycparser=2.19=py36_0
- pycrypto=2.6.1=py36h14c3975_9
- pynacl=0.3.0=py36_0
- pyopenssl=19.1.0=py36_0
- pysftp=0.2.9=py36_0
- pysocks=1.7.1=py36_0
- python=3.6.9=h265db76_0
- python-dateutil=2.8.1=py_0
- pytools=2019.1.1=py_0
- pytz=2019.3=py_0
- pyyaml=5.1.2=py36h7b6447c_0
- qt=5.6.3=h8bf5577_3
- r=3.6.0=r36_0
- r-askpass=1.0=r36h14c3975_0
- r-assertthat=0.2.1=r36h6115d3f_0
- r-backports=1.1.4=r36h96ca727_0
- r-base=3.6.1=h9bb98a2_1
- r-base64enc=0.1_3=r36h96ca727_4
- r-bh=1.69.0_1=r36h6115d3f_0
- r-bit=1.1_14=r36h96ca727_0
- r-bit64=0.9_7=r36h96ca727_0
- r-bitops=1.0_6=r36h96ca727_4
- r-blob=1.1.1=r36h6115d3f_0
- r-boot=1.3_20=r36h6115d3f_0
- r-callr=3.3.2=r36h6115d3f_0
- r-catools=1.17.1.2=r36h29659fb_0
- r-cellranger=1.1.0=r36h6115d3f_0
- r-class=7.3_15=r36h96ca727_0
- r-cli=1.1.0=r36h6115d3f_0
- r-clipr=0.6.0=r36h6115d3f_0
- r-clisymbols=1.2.0=r36h6115d3f_1002
- r-cluster=2.0.8=r36ha65eedd_0
- r-codetools=0.2_16=r36h6115d3f_0
- r-colorspace=1.4_1=r36h96ca727_0
- r-config=0.3=r36h6115d3f_0
- r-crayon=1.3.4=r36h6115d3f_0
- r-curl=3.3=r36h96ca727_0
- r-dbi=1.0.0=r36h6115d3f_0
- r-dbplyr=1.4.0=r36h6115d3f_0
- r-desc=1.2.0=r36h6115d3f_1002
- r-devtools=2.0.2=r36h6115d3f_0
- r-dichromat=2.0_0=r36h6115d3f_4
- r-digest=0.6.18=r36h96ca727_0
- r-dplyr=0.8.0.1=r36h29659fb_0
- r-ellipsis=0.1.0=r36h96ca727_0
- r-evaluate=0.13=r36h6115d3f_0
- r-fansi=0.4.0=r36h96ca727_0
- r-forcats=0.4.0=r36h6115d3f_0
- r-foreign=0.8_71=r36h96ca727_0
- r-forge=0.2.0=r36h6115d3f_0
- r-fs=1.3.1=r36h0357c0b_1
- r-generics=0.0.2=r36h6115d3f_0
- r-ggplot2=3.1.1=r36h6115d3f_0
- r-gh=1.0.1=r36h6115d3f_1002
- r-git2r=0.26.1=r36h5ca76e2_1
- r-glue=1.3.1=r36h96ca727_0
- r-gtable=0.3.0=r36h6115d3f_0
- r-haven=2.1.0=r36h29659fb_0
- r-highr=0.8=r36h6115d3f_0
- r-hms=0.4.2=r36h6115d3f_0
- r-htmltools=0.3.6=r36h29659fb_0
- r-htmlwidgets=1.3=r36h6115d3f_0
- r-httpuv=1.5.1=r36h29659fb_0
- r-httr=1.4.0=r36h6115d3f_0
- r-ini=0.3.1=r36h6115d3f_1002
- r-jsonlite=1.6=r36h96ca727_0
- r-kernsmooth=2.23_15=r36ha65eedd_4
- r-knitr=1.22=r36h6115d3f_0
- r-labeling=0.3=r36h6115d3f_4
- r-later=0.8.0=r36h29659fb_0
- r-lattice=0.20_38=r36h96ca727_0
- r-lazyeval=0.2.2=r36h96ca727_0
- r-magrittr=1.5=r36h6115d3f_4
- r-markdown=0.9=r36h96ca727_0
- r-mass=7.3_51.3=r36h96ca727_0
- r-matrix=1.2_17=r36h96ca727_0
- r-memoise=1.1.0=r36h6115d3f_1003
- r-mgcv=1.8_28=r36h96ca727_0
- r-mime=0.6=r36h96ca727_0
- r-miniui=0.1.1.1=r36h6115d3f_0
- r-mongolite=2.0.1=r36h96ca727_0
- r-munsell=0.5.0=r36h6115d3f_0
- r-nlme=3.1_139=r36ha65eedd_0
- r-nnet=7.3_12=r36h96ca727_0
- r-odbc=1.1.5=r36hf484d3e_0
- r-openssl=1.3=r36h96ca727_0
- r-packrat=0.5.0=r36h6115d3f_0
- r-pillar=1.3.1=r36h6115d3f_0
- r-pkgbuild=1.0.6=r36h6115d3f_0
- r-pkgconfig=2.0.2=r36h6115d3f_0
- r-pkgload=1.0.2=r36h0357c0b_1001
- r-pki=0.1_5.1=r36h96ca727_1
- r-plogr=0.2.0=r36h6115d3f_0
- r-plyr=1.8.4=r36h29659fb_0
- r-prettyunits=1.0.2=r36h6115d3f_0
- r-processx=3.4.1=r36hcdcec82_0
- r-profvis=0.3.5=r36h96ca727_0
- r-progress=1.2.0=r36h6115d3f_0
- r-promises=1.0.1=r36h29659fb_0
- r-ps=1.3.0=r36hcdcec82_1001
- r-purrr=0.3.2=r36h96ca727_0
- r-r2d3=0.2.3=r36h6115d3f_0
- r-r6=2.4.0=r36h6115d3f_0
- r-rappdirs=0.3.1=r36h96ca727_0
- r-rcmdcheck=1.3.3=r36h6115d3f_2
- r-rcolorbrewer=1.1_2=r36h6115d3f_0
- r-rcpp=1.0.1=r36h29659fb_0
- r-rcurl=1.95_4.12=r36h96ca727_0
- r-readr=1.3.1=r36h29659fb_0
- r-readxl=1.3.1=r36h29659fb_0
- r-recommended=3.6.0=r36_0
- r-rematch=1.0.1=r36h6115d3f_0
- r-remotes=2.1.0=r36h6115d3f_1
- r-reshape2=1.4.3=r36h29659fb_0
- r-rjava=0.9_11=r36h96ca727_0
- r-rjdbc=0.2_7.1=r36h6115d3f_0
- r-rjsonio=1.3_1.1=r36h29659fb_0
- r-rlang=0.3.4=r36h96ca727_0
- r-rmarkdown=1.12=r36h6115d3f_0
- r-rpart=4.1_15=r36h96ca727_0
- r-rprojroot=1.3_2=r36h6115d3f_0
- r-rsconnect=0.8.13=r36h6115d3f_0
- r-rstudioapi=0.10=r36h6115d3f_0
- r-scales=1.0.0=r36h29659fb_0
- r-sessioninfo=1.1.1=r36h6115d3f_1001
- r-shiny=1.3.2=r36h6115d3f_0
- r-sourcetools=0.1.7=r36h29659fb_0
- r-sparklyr=1.0.0=r36h6115d3f_0
- r-spatial=7.3_11=r36h96ca727_4
- r-stringi=1.4.3=r36h29659fb_0
- r-stringr=1.4.0=r36h6115d3f_0
- r-survival=2.44_1.1=r36h96ca727_0
- r-sys=3.2=r36h96ca727_0
- r-tibble=2.1.1=r36h96ca727_0
- r-tidyr=0.8.3=r36h29659fb_0
- r-tidyselect=0.2.5=r36h29659fb_0
- r-tinytex=0.12=r36h6115d3f_0
- r-usethis=1.5.1=r36h6115d3f_1
- r-utf8=1.1.4=r36h96ca727_0
- r-viridislite=0.3.0=r36h6115d3f_0
- r-whisker=0.4=r36h6115d3f_0
- r-withr=2.1.2=r36h6115d3f_0
- r-xfun=0.6=r36h6115d3f_0
- r-xml2=1.2.0=r36h29659fb_0
- r-xopen=1.0.0=r36h6115d3f_1002
- r-xtable=1.8_4=r36h6115d3f_0
- r-yaml=2.2.0=r36h96ca727_0
- readline=7.0=h7b6447c_5
- rename=1.601=0
- requests=2.22.0=py36_0
- rstudio=1.1.456=h6bb024c_1
- sed=4.7=h1bed415_1000
- seqprep=1.3.2=ha92aebf_3
- setuptools=42.0.2=py36_0
- six=1.13.0=py36_0
- snakemake=4.0.0=py36_0
- sqlite=3.30.1=h7b6447c_0
- tk=8.6.8=hbc83047_0
- tktable=2.10=h14c3975_0
- typing_extensions=3.7.4.1=py36_0
- unixodbc=2.3.7=h14c3975_0
- urllib3=1.24.2=py36_0
- vsearch=2.14.1=h2d02072_0
- wheel=0.33.6=py36_0
- wrapt=1.11.2=py36h7b6447c_0
- xopen=0.7.3=py_0
- xz=5.2.4=h14c3975_4
- yaml=0.1.7=had09818_2
- yarl=1.3.0=py36h7b6447c_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.3.7=h0b5b093_0
prefix: /home/terri/miniconda3/envs/myenv.3