Shiny-SoSV provides an interactive and visual platform for users to easily explore the impact of different parameters on the power to detect somatic structural variants derived from short-read whole genome sequencing. Therefore, it enables users to rapidly address essential questions related to their study design.
If you use the Shiny-SoSV, please cite:
Gong T, Hayes VM, Chan EKF (2020) Shiny-SoSV: A web-based performance calculator for somatic structural variant detection. PLoS ONE 15(8): e0238108. https://doi.org/10.1371/journal.pone.0238108
Shiny-SoSV does not need to be installed and is hosted on Shinyapps.so: https://hcpcg.shinyapps.io/Shiny-SoSV/.
To obtain the code and prediction models to your local machine, run the command in a bash terminal:
git clone https://github.com/tgong1/Shiny-SoSV.git
See Shiny-SoSV User Guide and Example Use Cases pages for further details regarding the usage of Shiny-SoSV.