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mt.datasets.simulate_data generates wrong categories #636

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giovp opened this issue Dec 11, 2023 · 2 comments
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mt.datasets.simulate_data generates wrong categories #636

giovp opened this issue Dec 11, 2023 · 2 comments
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@ArinaDanilina

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@giovp
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giovp commented Dec 11, 2023

generates categories but not numerical, and can't be used in the e.g. temporal problem. I would switch to simulate data to numeric categorical

TypeError: Expected `adata.obs['batch']` to be categorical with numeric categories, found `categorical`.
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MUCDK commented Dec 11, 2023

Can you check if batch_key (or similar argument ) is time or day, the dtype is correct?

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MUCDK commented Dec 11, 2023

But yes, simulate_data needs some cleaning + extensions.

@ArinaDanilina ArinaDanilina mentioned this issue Mar 14, 2024
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@MUCDK MUCDK closed this as completed Mar 27, 2024
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