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Releases: tom-tan/ep3

v1.7.0

19 May 08:40
v1.7.0
4e3b195
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  • cwl-metrics extension: Update supported format version to 0.2.0

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.6.0

12 May 12:46
v1.6.0
702602c
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  • Add --compute-checksum and --no-compute-checksum options

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.5.0

06 May 13:10
v1.5.0
43c0a8c
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Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.4.0

16 Apr 16:50
4d37da8
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  • Improve log messages
  • Restructure log-related arguments
    • --leave-tmpdir
      • Do not remove temporary directory
    • --leave-tmpdir-on-errors (default)
      • Do not remove temporary directory if ep3 fails
    • --remove-tmpdir
      • Always remove temporary directory when ep3 finish execution
  • Update requirements

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.3.2

29 Mar 11:53
31ca57a
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  • Update requirements
  • cwl-metrics extension
    • Fix fluent-bit.conf for time series metrics
    • Fix telegraf.conf not to collect unrelated container metrics

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.3.1

26 Mar 13:55
055f3f0
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Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.3.0

19 Mar 13:55
25c1b66
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  • Add experimental support for CWL-metrics-compatible metrics collection scheme
    • By running ep3-runner with the --extension=cwl-metrics option, it collects and sends metrics to elasticsearch server in http://$ES_HOST:$ES_PORT.
    • It needs the following extra requirements:
    • There are several limitations in the current implementation. They are fixed in future releases.
      • It collects metrics only with the successful case
      • It only supports simple workflows (Non-nested and non-scatter workflows)
      • DockerRequirement is needed for CommandLineTools
      • ExpressionTools are not supported

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.2.1

01 Mar 08:52
d2a402d
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  • Add ep3 hook subcommand for extensions (experimental)

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.1.1

17 Feb 13:53
1b04ff8
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  • Update requirements
    • medal v0.4.0 or later

Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement

v1.1.0

17 Feb 13:07
aef1f22
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Conformance tests for CWL v1.0

version commit

Classes

CommandLineTool ExpressionTool Workflow

Required features

Required

Optional features

DockerRequirement EnvVarRequirement InitialWorkDirRequirement InlineJavascriptRequirement MultipleInputFeatureRequirement ResourceRequirement ScatterFeatureRequirement SchemaDefRequirement ShellCommandRequirement StepInputExpressionRequirement SubworkflowFeatureRequirement